BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZG09RM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1359 1604 0.0
>3x_Contig1359
Length = 7536
Score = 1604 bits (809), Expect = 0.0
Identities = 881/900 (97%), Gaps = 4/900 (0%)
Strand = Plus / Plus
Query: 49 ctgttttgtgattttagaggacgagtttttatatcttcataaaaatggtatttgcaataa 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctgttttgtgattttagaggacgagtttttatatcttcataaaaatggtatttgcaataa 382
Query: 109 gccacaatttcactatgaagcagataattcagaggaagagttcgcggtgttttacaacaa 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gccacaatttcactatgaagcagataattcagaggaagagttcgcggtgttttacaacaa 442
Query: 169 ctgggatggattgcagttaccagaaacgagattcggagaccagttcaccagtaaatatag 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctgggatggattgcagttaccagaaacgagattcggagaccagttcaccagtaaatatag 502
Query: 229 ttttttgaaatgggttgacgtattctatggtaccctgggtgggcatatgttctccgggac 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ttttttgaaatgggttgacgtattctatggtaccctgggtgggcatatgttctccgggac 562
Query: 289 tgctgttccctttggtatgtgtaagatgggtgtagatgtgatcaattcgaaaaagggcga 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tgctgttccctttggtatgtgtaagatgggtgtagatgtgatcaattcgaaaaagggcga 622
Query: 349 cgcgtactctgggtttcaacccgatggtgaggttgttggagtttcgttattgcatgaatc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cgcgtactctgggtttcaacccgatggtgaggttgttggagtttcgttattgcatgaatc 682
Query: 409 tggtaccggtggtgctcccacttatggggttgtttcgcagcttccaatgatagcttcgag 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tggtaccggtggtgctcccacttatggggttgtttcgcagcttccaatgatagcttcgag 742
Query: 469 tgcaagttcagttgatgtaacgaggcaaatttctttcaagaggaaatcgcctgacgttgc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tgcaagttcagttgatgtaacgaggcaaatttctttcaagaggaaatcgcctgacgttgc 802
Query: 529 gcacattggctattataaagtagaactcgataacggtgttgatatagaattttcatctaa 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gcacattggctattataaagtagaactcgataacggtgttgatatagaattttcatctaa 862
Query: 589 ggataggtctgggttgtatgaatatactttccccgaactgaaagacaacgggaaaccaat 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 ggataggtctgggttgtatgaatatactttccccgaactgaaagacaacgggaaaccaat 922
Query: 649 tatcatggtgaacgtgtctcagcatttgcattcttttggccgtccgtggtggactcagaa 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 tatcatggtgaacgtgtctcagcatttgcattcttttggccgtccgtggtggactcagaa 982
Query: 709 ttttagatcgggccaaatcaaagtctcttcagatttgaagtcttatcaaggtaaagtgac 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983 ttttagatcgggccaaatcaaagtctcttcagatttgaagtcttatcaaggtaaagtgac 1042
Query: 769 gataaattggagttggactgatcccggtgaatggaccgttagcctctttggggagtttga 828
||||||| | |||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 1043 gataaatggaggttggactgatcccggtgaatggaccgttagcttctttgggaagtttga 1102
Query: 829 catgcctgcacggtaagttgcttcgtttcaggaatggggagactctacccgttcctcaaa 888
|| ||||||||| |||||||| || |||||||||||| ||||||| |||||||||| |
Sbjct: 1103 caagcctgcacgtaaagttgctacg-ttcaggaatgggaggactcta-ccgttcctcaga 1160
Query: 889 agaatgcaatcttactctggtgaatcttgaaattgtngtattatttgaaatttgatgagg 948
|||||||||||||||||||||||||| ||| |||| |||||||||| ||||||||||||
Sbjct: 1161 agaatgcaatcttactctggtgaatc-tgatattggtgtattatttg-aatttgatgagg 1218
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5998
Number of Sequences: 1807
Number of extensions: 5998
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)