BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZG10FM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1699 1507 0.0
>3x_Contig1699
Length = 18038
Score = 1507 bits (760), Expect = 0.0
Identities = 813/826 (98%), Gaps = 4/826 (0%)
Strand = Plus / Plus
Query: 85 cattcctctttcatatctccacttcataccatatttcatgggaataagaattaaaaagtt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13816 cattcctctttcatatctccacttcataccatatttcatgggaataagaattaaaaagtt 13875
Query: 145 cccaacgaaaaccattccactgatgcaggtgaatgtcccaccaacgttcatcgatgattt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13876 cccaacgaaaaccattccactgatgcaggtgaatgtcccaccaacgttcatcgatgattt 13935
Query: 205 catttttgagaaacatgccatgaaaattgcagacaatacgcaacgcatgaaattgtaaca 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13936 catttttgagaaacatgccatgaaaattgcagacaatacgcaacgcatgaaattgtaaca 13995
Query: 265 gcttgttgctgttgaggatttacttgggtataaatcgaccaaaagcgtacttgaagtaga 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13996 gcttgttgctgttgaggatttacttgggtataaatcgaccaaaagcgtacttgaagtaga 14055
Query: 325 aagagtactcatagcacaaaacgagccgatgaaggatgtaactaaaacaactgcaatgtg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14056 aagagtactcatagcacaaaacgagccgatgaaggatgtaactaaaacaactgcaatgtg 14115
Query: 385 ccacctttgcttcagtgcccatccgaatagagtgaaaaccacagcagcgcaaacattttg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14116 ccacctttgcttcagtgcccatccgaatagagtgaaaaccacagcagcgcaaacattttg 14175
Query: 445 aggagcaccagaaattaatctagccttaaaggtattaaatcttgcatctttatcgataag 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14176 aggagcaccagaaattaatctagccttaaaggtattaaatcttgcatctttatcgataag 14235
Query: 505 acctgcctctttcttctccaagaactttttatgggaccttttataatacacatcaataat 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14236 acctgcctctttcttctccaagaactttttatgggaccttttataatacacatcaataat 14295
Query: 565 ttttcctgtacagaaagatcctaacaagccaccgataccagagggtaaatagcatacacc 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14296 ttttcctgtacagaaagatcctaacaagccaccgataccagagggtaaatagcatacacc 14355
Query: 625 aatcatagtcaatgagtagtcgtatggatctaatgcaagttccgctggaagagaagcaag 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14356 aatcatagtcaatgagtagtcgtatggatctaatgcaagttccgctggaagagaagcaag 14415
Query: 685 agaaagagtccataaggaaaattggaatgcagcgggtgagaagtgataagatgatttctg 744
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 14416 agaaagagtccataaggaaaattggaatgcagcggg-gagaagtgataagatgatttctg 14474
Query: 745 gcaatataagaaatctcattgctgaggtgatatcgaactttacttctgataagnctcttg 804
|||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 14475 gcaatataagaattctcattgctgaggtgatatcgaacttcacttctgataagtctcttg 14534
Query: 805 atgaat-attttgattattatattngaattgcttccttattgcaggcaaacgag-tattg 862
|||||| || | |||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 14535 atgaataatctggattatcatatttgaattgcttccttattgcaggcaaacgagttattg 14594
Query: 863 gggctatatttatccaac-ttttggtctaataaaaaagttccccac 907
|||||||||||||||||| ||||||||||||| | |||||||||||
Sbjct: 14595 gggctatatttatccaactttttggtctaatagataagttccccac 14640
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6733
Number of Sequences: 1807
Number of extensions: 6733
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)