BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC7ZG10RM1.SCF screened BAC_end
         (919 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1061                                                        1350   0.0  

>3x_Contig1061 
          Length = 4663

 Score = 1350 bits (681), Expect = 0.0
 Identities = 730/743 (98%), Gaps = 3/743 (0%)
 Strand = Plus / Minus

                                                                        
Query: 55   attacacggaaacaaattgcaaaccaaaaaacagtcatctattctcagtaaattagcgca 114
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3228 attacacggaaacaaattgcaaaccaaaaaacagtcatctattctcagtaaattagcgca 3169

                                                                        
Query: 115  tgccacaatctcagacgcagcaagggccaatg-aatttctacttaaattcaatgccgtta 173
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 3168 tgccacaatctcagacgcagcaagggccaatgcaatttctacttaaattcaatgccgtta 3109

                                                                        
Query: 174  agctaaagatgttagaaccggtctctgacactgtacagaagaagtctttccatacgaacg 233
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3108 agctaaagatgttagaaccggtctctgacactgtacagaagaagtctttccatacgaacg 3049

                                                                        
Query: 234  ctgggagtatcagagggaacaaatacagggtttcagtgacggagtccaaaaacagggttg 293
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3048 ctgggagtatcagagggaacaaatacagggtttcagtgacggagtccaaaaacagggttg 2989

                                                                        
Query: 294  acccccttaaagaaagtctttcattcatttcagatccttctaagttcgatgaatcacaga 353
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2988 acccccttaaagaaagtctttcattcatttcagatccttctaagttcgatgaatcacaga 2929

                                                                        
Query: 354  ttaaacacccagccgatcttcctattcccatacagacaataagtactgaagataaccctc 413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2928 ttaaacacccagccgatcttcctattcccatacagacaataagtactgaagataaccctc 2869

                                                                        
Query: 414  caactgacaccaccataacaaatataaccgaaactatatcaaaccaaggacaaactagtg 473
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2868 caactgacaccaccataacaaatataaccgaaactatatcaaaccaaggacaaactagtg 2809

                                                                        
Query: 474  tcacttccgattct-atagcattaaaaattcgttgaagcgtggaatagacagcgttcccg 532
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2808 tcacttccgattctaatagcattaaaaattcgttgaagcgtggaatagacagcgttcccg 2749

                                                                        
Query: 533  gcccttcgtctactatccaccaagctcagatgaaaaagaaattatcgnttgctgattata 592
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2748 gcccttcgtctactatccaccaagctcagatgaaaaagaaattatcgtttgctgattata 2689

                                                                        
Query: 593  ngaaaaaaatcaaacctgcttaaccgatgactttcttggtatcgaaaccttcattagcac 652
             ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 2688 agaaaaaaatcaaacctgcttaacggatgacttccttggtatcgaaaccttcattagcac 2629

                                                                        
Query: 653  gcaaactttttttt-agttcgggatgtacctataggtagtcagcggtgggtataaacggg 711
            |||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 2628 gcaaacttttttttcagttcgggatgtacctataggtagtcagcggtggtaataaacggg 2569

                                                                        
Query: 712  gagagtgtacttaacaatttagcctccttctcataaaatgaacttttttttgccagtttt 771
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 2568 gagagtgtacttaacaatttagcctccttctcataaaatgaacttttttttgcgagttat 2509

                                   
Query: 772  ttagaaatttggacggggggttc 794
            |||| ||||||||||| ||||||
Sbjct: 2508 ttaggaatttggacggtgggttc 2486


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6506
Number of Sequences: 1807
Number of extensions: 6506
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)