BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZH01FM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig213 1370 0.0
>3x_Contig213
Length = 1583
Score = 1370 bits (691), Expect = 0.0
Identities = 698/699 (99%), Gaps = 1/699 (0%)
Strand = Plus / Minus
Query: 86 actgatactaattatcttgcatttttccttatcggtattgcattactttggccgtggaac 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 actgatactaattatcttgcatttttccttatcggtattgcattactttggccgtggaac 640
Query: 146 tcattcttaagtgcgtcattatatttccagcatgatgtatttcaagacacgtcggtgtat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 tcattcttaagtgcgtcattatatttccagcatgatgtatttcaagacacgtcggtgtat 580
Query: 206 gcaaggatttacatcagtaccatgatgacagttagtacgatatcatcggtactgtctaac 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gcaaggatttacatcagtaccatgatgacagttagtacgatatcatcggtactgtctaac 520
Query: 266 ataattttatccaaaattcaacatcattacactgaaagaattgttagtggattgttcttc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ataattttatccaaaattcaacatcattacactgaaagaattgttagtggattgttcttc 460
Query: 326 gaaattattgtatttacttcattatgtggtgtggtactattccatcgttggttatcccac 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gaaattattgtatttacttcattatgtggtgtggtactattccatcgttggttatcccac 400
Query: 386 ttactgtcattcatcatgattatgtttctagtgcttgtcagttccgttgcaactgcactc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ttactgtcattcatcatgattatgtttctagtgcttgtcagttccgttgcaactgcactc 340
Query: 446 tctcaaaccggtgtcatggctatggctaacgttttcggaccagaatacaatcatgcagtg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tctcaaaccggtgtcatggctatggctaacgttttcggaccagaatacaatcatgcagtg 280
Query: 506 atggtgggacaagccgtcgcaggggtactaccgtcgctagtgctcttcatggtctcgatc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 atggtgggacaagccgtcgcaggggtactaccgtcgctagtgctcttcatggtctcgatc 220
Query: 566 ttcaatcaaaaacaggaacaaacagcgacaggtatcaatctatatttcttatccactagt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 ttcaatcaaaaacaggaacaaacagcgacaggtatcaatctatatttcttatccactagt 160
Query: 626 gtcatgt-cgtttgcatccatcgtggcatataaaaaaagtgatatacctatcattggagg 684
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 gtcatgtgcgtttgcatccatcgtggcatataaaaaaagtgatatacctatcattggagg 100
Query: 685 agatatggctcagcggacagctgatgagcctaaggtttacgtcccattcaaagtgctttt 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 agatatggctcagcggacagctgatgagcctaaggtttacgtcccattcaaagtgctttt 40
Query: 745 cctgaaattaaggtaccttgtgctctctatatttaccat 783
|||||||||||||||||||||||||||||||||||||||
Sbjct: 39 cctgaaattaaggtaccttgtgctctctatatttaccat 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5815
Number of Sequences: 1807
Number of extensions: 5815
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)