BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZH01RM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1252 1449 0.0
>3x_Contig1252
Length = 5616
Score = 1449 bits (731), Expect = 0.0
Identities = 759/767 (98%), Gaps = 1/767 (0%)
Strand = Plus / Plus
Query: 48 catcaattcaggaccaattaaggaatacacaatatcaaaacctttaccaaatcacttcta 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4147 catcaattcaggaccaattaaggaatacacaatatcaaaacctttaccaaatcacttcta 4206
Query: 108 cagacatttttggcgtgttcgtgaagaacacattggttcatattatgaaaatgaagctcg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4207 cagacatttttggcgtgttcgtgaagaacacattggttcatattatgaaaatgaagctcg 4266
Query: 168 aatctttactaggcaaagttcttcacttgattcatctttgtgttgtcaataacctggcag 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4267 aatctttactaggcaaagttcttcacttgattcatctttgtgttgtcaataacctggcag 4326
Query: 228 actttgaacgaatattttggcatgagtatcatcttgacgagtctgagaatgggttttatc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4327 actttgaacgaatattttggcatgagtatcatcttgacgagtctgagaatgggttttatc 4386
Query: 288 atagtatcggatctttactctacaattttctatcttcggatgactttaacgtagagaatg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4387 atagtatcggatctttactctacaattttctatcttcggatgactttaacgtagagaatg 4446
Query: 348 gtaagatcagagagatattccgatttttgaaagatcgggcaccacacattaatgtggacg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4447 gtaagatcagagagatattccgatttttgaaagatcgggcaccacacattaatgtggacg 4506
Query: 408 attacctctcagaacagactccaaattatgaccccagaattttgttcactgatataagtg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4507 attacctctcagaacagactccaaattatgaccccagaattttgttcactgatataagtg 4566
Query: 468 aatcggaaaacgaggagtacattaagaagaagatgttagcaaagtcgagaagagaaaaac 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4567 aatcggaaaacgaggagtacattaagaagaagatgttagcaaagtcgagaagagaaaaac 4626
Query: 528 ttatgcagaagctagccaaacaacaaaaggaattcatggataacaacaatgtttctgcag 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4627 ttatgcagaagctagccaaacaacaaaaggaattcatggataacaacaatgtttctgcag 4686
Query: 588 aggatattagctcacaaggaaccaatctcgataactctgctatcggtatatgttggacat 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4687 aggatattagctcacaaggaaccaatctcgataactctgctatcggtatatgttggacat 4746
Query: 648 atccggaagatgattgtgtattttgcaagatgcccaaagattatgatgttttatcatacc 707
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4747 atccggaagatgattgtgtattttgcaagatgcccaaagattatgatgttttatcatact 4806
Query: 708 ttggatttgtcgaacgcaatgttgtttctatcaatttaacttcggatgacaaaacaaagg 767
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 4807 ttgtatttgtcgaacgcaatgttgtttctatcaatttagcttcggatgacaaaacaaagg 4866
Query: 768 atgtaggaattccacccggtgcttacaacttgtggcccctgggctca 814
||||| ||||| || |||||||||||||||||||||| ||| |||||
Sbjct: 4867 atgta-gaatttcaaccggtgcttacaacttgtggccactgtgctca 4912
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6790
Number of Sequences: 1807
Number of extensions: 6790
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)