BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZH02FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig975 1635 0.0
>3x_Contig975
Length = 5628
Score = 1635 bits (825), Expect = 0.0
Identities = 837/840 (99%), Gaps = 1/840 (0%)
Strand = Plus / Plus
Query: 86 tgattgattaagtaataagaactttctgagcatttcgatcaatagctacggtatggaaga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3977 tgattgattaagtaataagaactttctgagcatttcgatcaatagctacggtatggaaga 4036
Query: 146 agtacgagattaatagtactgaccttcttagtcatgtagtttgacatattctcttttttt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4037 agtacgagattaatagtactgaccttcttagtcatgtagtttgacatattctcttttttt 4096
Query: 206 gtacctgcgttacatttagaaagcacaacgaaggagtgtttctattgtagcagttattgt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4097 gtacctgcgttacatttagaaagcacaacgaaggagtgtttctattgtagcagttattgt 4156
Query: 266 tgtccaacgcttggttactttaattacggcatagaatattattattttagttgttacgca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4157 tgtccaacgcttggttactttaattacggcatagaatattattattttagttgttacgca 4216
Query: 326 aaagtgaagttgaagaattcagaaacggaaaattaagttcaaggacatttaaagcaatac 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4217 aaagtgaagttgaagaattcagaaacggaaaattaagttcaaggacatttaaagcaatac 4276
Query: 386 gatagatccaagggtttaattgctttgaaccttaaatgtgcaaaggtgaagggagaggga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4277 gatagatccaagggtttaattgctttgaaccttaaatgtgcaaaggtgaagggagaggga 4336
Query: 446 cacataacccaaccacatatatattgaccgtcgtgctttgacctaccgactattgaactt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4337 cacataacccaaccacatatatattgaccgtcgtgctttgacctaccgactattgaactt 4396
Query: 506 ttactattccgttctatacgttacagcactttaaagggttttcttttgggtttttgcagg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4397 ttactattccgttctatacgttacagcactttaaagggttttcttttgggtttttgcagg 4456
Query: 566 agatattttttcggtctgtttttaattatttctttgccatcgactgaccagtagaacgga 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4457 agatattttttcggtctgtttttaattatttctttgccatcgactgaccagtagaacgga 4516
Query: 626 aacacaatcaagtttgcatcattatcgtgaacgattccataaccaaattgtggcaat-aa 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4517 aacacaatcaagtttgcatcattatcgtgaacgattccataaccaaattgtggcaataaa 4576
Query: 685 caagcgtctgacttctatttgctgttttcttctttgaggttagctacactaacttctcac 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4577 caagcgtctgacttctatttgctgttttcttctttgaggttagctacactaacttctcac 4636
Query: 745 actagtaaacaggtggatntacaattttcgatcttaaccgacaaacaaagcaactgtgtc 804
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 4637 actagtaaacaggtggatttacaattttcgatcttaaccgacaaacaaagcaactgtgtc 4696
Query: 805 agcaaacagtcatattagagatatatcacccaatacatcatgagttcatccgttggttct 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4697 agcaaacagtcatattagagatatatcacccaatacatcatgagttcatccgttggttct 4756
Query: 865 actactattactagtagattcttggcattaaccaagaccactaaatttgcatgggtcatc 924
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 4757 actactattactagtagattcttggcattaaccaagaccactaaatttgcatggttcatc 4816
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6456
Number of Sequences: 1807
Number of extensions: 6456
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)