BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZH02RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1243 1534 0.0
3x_Contig1782 196 6e-50
>3x_Contig1243
Length = 5571
Score = 1534 bits (774), Expect = 0.0
Identities = 844/865 (97%), Gaps = 2/865 (0%)
Strand = Plus / Plus
Query: 47 tgctgcagtttacttacatatcatttttccaaagtgcagcacacgaggcatataataagt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2137 tgctgcagtttacttacatatcatttttccaaagtgcagcacacgaggcatataataagt 2196
Query: 107 atacttcagtcaataaaatctcgcagtgatgtcatctgttagatattatagctctaattc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2197 atacttcagtcaataaaatctcgcagtgatgtcatctgttagatattatagctctaattc 2256
Query: 167 atttcaacactgatatagcttttagtcttgaccaatgatgaattgatgatgttttgaaag 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2257 atttcaacactgatatagcttttagtcttgaccaatgatgaattgatgatgttttgaaag 2316
Query: 227 tttacctagtaagtaatagttgggtttgttaagaaaactctactcttcactgcgaagtgt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2317 tttacctagtaagtaatagttgggtttgttaagaaaactctactcttcactgcgaagtgt 2376
Query: 287 gcttcaacgtgtaagtaacaataaactcattacaataaattgaaattaatggggctagac 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2377 gcttcaacgtgtaagtaacaataaactcattacaataaattgaaattaatggggctagac 2436
Query: 347 tttgttaccgataactaacaggatggggaaagaaggaacttagcatggataaacatctga 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2437 tttgttaccgataactaacaggatggggaaagaaggaacttagcatggataaacatctga 2496
Query: 407 tgcttctggatattgtcattgaccaaagatatatttgacatttgaaaccaaatgtgacaa 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2497 tgcttctggatattgtcattgaccaaagatatatttgacatttgaaaccaaatgtgacaa 2556
Query: 467 catctggttacagtggccgagtggttaaggcgatgccctgctattcttagatagagaggc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2557 catctggttacagtggccgagtggttaaggcgatgccctgctattcttagatagagaggc 2616
Query: 527 attggactttgtcttcgcaggttcgaatcctgtctgtgacgccaatttttttttttctaa 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2617 attggactttgtcttcgcaggttcgaatcctgtctgtgacgccaatttttttttttctaa 2676
Query: 587 atccatttttttcgttcttattcgtcacatagaaaaggcagttcaagaagagcatatgcc 646
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2677 atccatttttttcgttcttattcgtcacatagaaaaggcagttcaggaagagcatatgcc 2736
Query: 647 aatttgatgtaacatctagtttgcatttatgttcttgcttggtattcattgcttttagtc 706
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 2737 aatttgatgtaacatctagtttgcattttgtttcttgcttggtattcattgcttttagtc 2796
Query: 707 ctcatatttcaaactataactggtactaataaagatgtttatatagatgaaggtttttgg 766
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2797 ctcatatttcaaactataactggtactaataaagatgtttatatagatgaagg-ttttgg 2855
Query: 767 aagagattcacgtttcagtgtcttgataccatgggtccgggcacattaagatgtacctat 826
|||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||
Sbjct: 2856 aagagattcacgtttcagtgtcttgataccatgggtccggcaccataaggatgtacctat 2915
Query: 827 ncatagcttctctgaatctggtcctatattggctaagcgtcacgaacggtggcctccttc 886
||||||||||||||||||| || ||||||| ||| |||||||| ||||| | |||||||
Sbjct: 2916 ccatagcttctctgaatctgttcttatattgtctaggcgtcacg-acggttggctccttc 2974
Query: 887 gtactttccccaacagttcctttct 911
|||||| |||||||| ||||||||
Sbjct: 2975 gtacttcccccaacaagtcctttct 2999
>3x_Contig1782
Length = 24703
Score = 196 bits (99), Expect = 6e-50
Identities = 102/103 (99%)
Strand = Plus / Plus
Query: 476 acagtggccgagtggttaaggcgatgccctgctattcttagatagagaggcattggactt 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11910 acagtggccgagtggttaaggcgatgccctgctattcttagatagagaggcattggactt 11969
Query: 536 tgtcttcgcaggttcgaatcctgtctgtgacgccaattttttt 578
||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 11970 tgtcttcgcaggttcgaatcctgtctgtgacgccatttttttt 12012
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,411
Number of Sequences: 1807
Number of extensions: 12411
Number of successful extensions: 86
Number of sequences better than 1.0e-20: 2
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)