BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZH03FM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1766 1528 0.0
>3x_Contig1766
Length = 23951
Score = 1528 bits (771), Expect = 0.0
Identities = 836/847 (98%), Gaps = 8/847 (0%)
Strand = Plus / Plus
Query: 87 tctacatcaaggtatatcttttggaatttttatatatctagtctcaaaccaaatccgctt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13781 tctacatcaaggtatatcttttggaatttttatatatctagtctcaaaccaaatccgctt 13840
Query: 147 tgagaatacctagacccgcatacgcttaggcatgtacatagatagaatatataagatcta 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13841 tgagaatacctagacccgcatacgcttaggcatgtacatagatagaatatataagatcta 13900
Query: 207 atttcaactgtgcttcgaagaacacgcaagttgaacttaacaaaccccggagaataggca 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13901 atttcaactgtgcttcgaagaacacgcaagttgaacttaacaaaccccggagaataggca 13960
Query: 267 attcatatacttaaagattggaggcgcggcatttgtccctcaaatgcatggtaaccataa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13961 attcatatacttaaagattggaggcgcggcatttgtccctcaaatgcatggtaaccataa 14020
Query: 327 ccatcaatccattccaatccaagtggaatctgaattctagacggaggtctcgaagagacc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14021 ccatcaatccattccaatccaagtggaatctgaattctagacggaggtctcgaagagacc 14080
Query: 387 atcatcttcacccatacttactgatcgcacgatcgtttctatgaacattctttctcgatc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14081 atcatcttcacccatacttactgatcgcacgatcgtttctatgaacattctttctcgatc 14140
Query: 447 tcaattccgttacgatgatctggaaagaaaaagacggattttttcgaaaaaagacgtttt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14141 tcaattccgttacgatgatctggaaagaaaaagacggattttttcgaaaaaagacgtttt 14200
Query: 507 atttttattgtttgaattttccattttttttttttttttggcgaagcacctttccttttg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14201 atttttattgtttgaattttccattttttttttttttttggcgaagcacctttccttttg 14260
Query: 567 atctattttgcttgaatgattttcagatcaaatatagtataaataaaatgtgttacatgt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14261 atctattttgcttgaatgattttcagatcaaatatagtataaataaaatgtgttacatgt 14320
Query: 627 taacaagtacatgagatttaaactttgatctgtagtttgtacgttgcctttttttttgct 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14321 taacaagtacatgagatttaaactttgatctgtagtttgtacgttgcctttttttttgct 14380
Query: 687 ctgtataggttgactcacttgtgcagagtgaatattagctggcacatctttttccatttg 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14381 ctgtataggttgactcacttgtgcagagtgaatattagctggcacatctttttccatttg 14440
Query: 747 gtttagagaggaggaacagttgttattttcgatctgatatattgaggaaatatgcagttt 806
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 14441 gtttagagaggaggaacagttgtta-tttcgatctgatatattgaggaaatatgcagttt 14499
Query: 807 ggtgataccgctgctattattagtctctgcgataaaaccag-tctgggtcaccatcctgc 865
|||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||
Sbjct: 14500 -gtgataccgctgctattattagtctctgcgataaaaccagttctgggtcagcagtctgc 14558
Query: 866 ggcgggaaaatgacgggagggataacggcaaagcaacggtaccaacaagtacactattct 925
||| |||||||||| |||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct: 14559 ggc-ggaaaatgac-ggagggataacggc-aagcaacggta-caacaagtacacta-tct 14613
Query: 926 ccttcct 932
|||||||
Sbjct: 14614 ccttcct 14620
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,842
Number of Sequences: 1807
Number of extensions: 17842
Number of successful extensions: 2560
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)