BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZH03RM1.SCF screened BAC_end
(964 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1720 1423 0.0
>3x_Contig1720
Length = 19870
Score = 1423 bits (718), Expect = 0.0
Identities = 850/887 (95%), Gaps = 6/887 (0%)
Strand = Plus / Minus
Query: 47 tcggtgatcacttagggataaaggaatgaaaaacagatagtagaaaatcagtcctaatga 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6948 tcggtgatcacttagggataaaggaatgaaaaacagatagtagaaaatcagtcctaatga 6889
Query: 107 gaaagaataaatacgtaacgtaacttactcactaacagctgacttcacctcgtgcacagc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6888 gaaagaataaatacgtaacgtaacttactcactaacagctgacttcacctcgtgcacagc 6829
Query: 167 tcttgttcttggtaaaaagcgcttggcaatacatacggatccaatatgttcctttttttt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6828 tcttgttcttggtaaaaagcgcttggcaatacatacggatccaatatgttcctttttttt 6769
Query: 227 tttgtaaaacattgtcacgttaatgcctcaatcaaactgcaaaggtacgtgacgatatgc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6768 tttgtaaaacattgtcacgttaatgcctcaatcaaactgcaaaggtacgtgacgatatgc 6709
Query: 287 ctgatttcctgcgaaagacaaaaaaaggtatagaaatggtgaagagcaatatacttaagg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6708 ctgatttcctgcgaaagacaaaaaaaggtatagaaatggtgaagagcaatatacttaagg 6649
Query: 347 tagagaagcagagggctcttaatcttttctgaagtgcgtatatttagggtatttcttctt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6648 tagagaagcagagggctcttaatcttttctgaagtgcgtatatttagggtatttcttctt 6589
Query: 407 ttttttttgagcgatattattcagatctcttatttgcccttctttcatatcaaattacca 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6588 ttttttttgagcgatattattcagatctcttatttgcccttctttcatatcaaattacca 6529
Query: 467 tttgtagcacgaaccctcgtacaaacgacattgatggacaaattttccaggcgaaaggta 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6528 tttgtagcacgaaccctcgtacaaacgacattgatggacaaattttccaggcgaaaggta 6469
Query: 527 ggaggtgtagaagttgcaaacggtttagctggtgtgattggttagaccgcagttaggata 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6468 ggaggtgtagaagttgcaaacggtttagctggtgtgattggttagaccgcagttaggata 6409
Query: 587 cgtacacaatacataccatctttcggcaacagtagcgctagacttgagacaatagatctn 646
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 6408 cgtacacaatacataccatcttccggcaacagtagcgctagacttgagacaatagatctg 6349
Query: 647 gtgtattcagatcgtgtcaattatcaaatttcag-acactgaaataagtgtactgaaatg 705
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 6348 tgttattcagatcgtgtcaattatcaaatttcagaacactgaaataagtgtactgaaatg 6289
Query: 706 aactganaaaaatggctaatagatgcccagattcagctggcggaactggcatgatgctta 765
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 6288 aactgagaaaaatggctaatagatgcccagattcagctgccggaactggcatgatgc-ta 6230
Query: 766 aaagggaaaatgctcttggcattggttgggtaccantttcccgt-ttacatgggggaatt 824
||| ||||||||||||||||||||||||| |||| |||| || | |||| |||| |||
Sbjct: 6229 aaatggaaaatgctcttggcattggttggtaaccag-ttccggtatcacat-ggggtatt 6172
Query: 825 attttatcgtaaaacctggaaggaagggggcaggttgccctatgggctaattggatttaa 884
|| |||||||| ||| ||| ||| |||||||||||||||||||| |||||||| ||| |
Sbjct: 6171 atcttatcgtagaacgtgg-agggagggggcaggttgccctatgtgctaattgtattaac 6113
Query: 885 cctttacaatgggaaaaccgggcaatgtaccctttcttaaaaaaaag 931
| ||||| |||| ||| | ||| ||||| |||||| ||||||||||
Sbjct: 6112 cttttacgatggcaaatacaggcgatgtagcctttcataaaaaaaag 6066
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,178
Number of Sequences: 1807
Number of extensions: 13178
Number of successful extensions: 86
Number of sequences better than 1.0e-20: 1
length of query: 964
length of database: 10,358,551
effective HSP length: 16
effective length of query: 948
effective length of database: 10,329,639
effective search space: 9792497772
effective search space used: 9792497772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)