BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZH04FM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1534 1562 0.0
>3x_Contig1534
Length = 9979
Score = 1562 bits (788), Expect = 0.0
Identities = 819/826 (99%), Gaps = 3/826 (0%)
Strand = Plus / Minus
Query: 88 cttctggtggtaaatcaacgataaggaaaccattgacaccagcagcaccagcatccttaa 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3396 cttctggtggtaaatcaacgataaggaaaccattgacaccagcagcaccagcatccttaa 3337
Query: 148 tgaatttctcttcaccgtagtttaagataggattatagtaacccatcaatacaattggta 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3336 tgaatttctcttcaccgtagtttaagataggattatagtaacccatcaatacaattggta 3277
Query: 208 cggtgatacctttttctcttgcttgcttaactagagccaaaacttttggcatatcgatac 267
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3276 cggtgataccttcttctcttgcttgcttaactagagccaaaacttttggcatatcgatac 3217
Query: 268 cgttcttcaatgcaacagtattggcaatttgaatcactggaccatcagcaactggatcag 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3216 cgttcttcaatgcaacagtattggcaatttgaatcactggaccatcagcaactggatcag 3157
Query: 328 aaaatggtaagcctaactcaataacatcaacaccaccgtcttggaaacccttcatgattt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3156 aaaatggtaagcctaactcaataacatcaacaccaccgtcttggaaacccttcatgattt 3097
Query: 388 gaatggtatcctctagggttggatatccagcagtcataaaagtgacaagggcattgcggc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3096 gaatggtatcctctagggttggatatccagcagtcataaaagtgacaagggcattgcggc 3037
Query: 448 cttctttcttagcgttttcaaacgcttgtctcaacaacacagacatgtttctttagatca 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3036 cttctttcttagcgttttcaaacgcttgtctcaacaacacagacatgtttctttagatca 2977
Query: 508 atgttgagcttgagatttgataagtggtaaaagaatgatagaacaaacttaaatcacgct 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2976 atgttgagcttgagatttgataagtggtaaaagaatgatagaacaaacttaaatcacgct 2917
Query: 568 aatggattgcatttctcttctgtaaatgagtgtatgtgcgatatatatgtgaagagtact 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2916 aatggattgcatttctcttctgtaaatgagtgtatgtgcgatatatatgtgaagagtact 2857
Query: 628 tcttttcgaatcgatttttttttcacaacgaaattaagtgcagatgactcaaagtaaggc 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2856 tcttttcgaatcgatttttttttcacaacgaaattaagtgcagatgactcaaagtaaggc 2797
Query: 688 taggaagattaatagtagatggataacagaggtacaggcacgatgcgcgcggtactggct 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2796 taggaagattaatagtagatggataacagaggtacaggcacgatgcgcgcggtactggct 2737
Query: 748 tataatcaatttgatataccaatttgataaaccagaaactagcttgaatacgatgaggtg 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2736 tataatcaatttgatataccaatttgataaaccagaaactagcttgaatacgatgaggtg 2677
Query: 808 ctcgaaataaa-aatcaccgtttnctggatcagtattacgtaatattgccatataaactt 866
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2676 ctcgaaataaagaatcaccgtttcctggatcagtattacgtaatattgccatataaactt 2617
Query: 867 atattg-aacacagctttataaacga-gttatgcanaaacaaacaa 910
|||||| ||||||||||||||||||| || ||||| ||||||||||
Sbjct: 2616 atattgaaacacagctttataaacgaggtaatgcaaaaacaaacaa 2571
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7220
Number of Sequences: 1807
Number of extensions: 7220
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)