BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZH04RM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig985 1106 0.0
>3x_Contig985
Length = 5529
Score = 1106 bits (558), Expect = 0.0
Identities = 618/633 (97%), Gaps = 4/633 (0%)
Strand = Plus / Minus
Query: 48 tacacatgcaattcaatgcgtttaatctctcctttttaatgaattgattaactaaatggc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4961 tacacatgcaattcaatgcgtttaatctctcctttttaatgaattgattaactaaatggc 4902
Query: 108 gctccgggccctttgtttgttgataaattctcatgaaggtatgatagttattttcaatct 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4901 gctccgggccctttgtttgttgataaattctcatgaaggtatgatagttattttcaatct 4842
Query: 168 gtgcttcagacatttttaatgctctttgtatcatttcattgtcatacatatgacttatgg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4841 gtgcttcagacatttttaatgctctttgtatcatttcattgtcatacatatgacttaggg 4782
Query: 228 tagttaggagttggaagtgcaactgattaatgctggaatggtccgaggtcatcatgtggt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4781 tagttaggagttggaagtgcaactgattaatgctggaatggtccgaggtcatcatgtggt 4722
Query: 288 agagtattctgtaactgatgaattcgggcaagt-cgctcttgtcaatgttatctttttca 346
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 4721 agagtattctgtaactgatgaattcgggcaagtccgctcttgtcaatgttatctttttca 4662
Query: 347 aacaaaggcttcaaactactttgacattgattatattcaccgacatctccgttctcaaga 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4661 aacaaaggcttcaaactactttgacattgattatattcaccgacatctccgttctcaaga 4602
Query: 407 tctgcgcgtgcatgcgtcttataaacagtaacagtaaaatcattctcgatcatttgcact 466
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4601 gctgcgcgtgcatgcgtcttataaacagtaacagtaaaatcattctcgatcatttgcact 4542
Query: 467 ttcaagtcctgccttatagatttcaactgatcacagaaatactgantagagcacgaaccg 526
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 4541 ttcaagtcctgccttatagatttcaactgatcacagaaatactgataagagcacgaaccg 4482
Query: 527 ctatgaaacttggtcacaatccagtcaagagcttt-attaaaatggac-acgggcgtact 584
||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||
Sbjct: 4481 ctatgaaacttggtcacaatccagtcaagagctttaattaacatggacaacgggcgtact 4422
Query: 585 tttgcccgatctggtt-acaaataaggcttaaatattttttctctaacacttgacattgc 643
|||||| ||||||||| | || |||| |||||||||||||||||||||||||||||||||
Sbjct: 4421 tttgccggatctggttcagaagtaagtcttaaatattttttctctaacacttgacattgc 4362
Query: 644 cccacattcggcttgttcttgtcaaattaataa 676
|||||| ||||||||||||||||||||| ||||
Sbjct: 4361 cccacaatcggcttgttcttgtcaaatttataa 4329
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7763
Number of Sequences: 1807
Number of extensions: 7763
Number of successful extensions: 75
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)