BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZH05FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1642 1560 0.0
>3x_Contig1642
Length = 16641
Score = 1560 bits (787), Expect = 0.0
Identities = 804/810 (99%)
Strand = Plus / Minus
Query: 85 tgagcgaagtgattttctgtttaaagttccaacgaaatcagaggcaaccagttggttgaa 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12559 tgagcgaagtgattttctgtttaaagttccaacgaaatcagaggcaaccagttggttgaa 12500
Query: 145 gttaagtcccaaatcagagtgatttgcatcaaggatttgaagagctcgttttgtttctga 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12499 gttaagtcccaaatcagagtgatttgcatcaaggatttgaagagctcgttttgtttctga 12440
Query: 205 atcagatgtgtaactcgcataattgggaacattcaataagctgttaatcttcttggataa 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12439 atcagatgtgtaactcgcataattgggaacattcaataagctgttaatcttcttggataa 12380
Query: 265 aagttggtttgtagttgtaggtttctcgatgttatttgatataggagctgcgacctcctt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12379 aagttggtttgtagttgtaggtttctcgatgttatttgatataggagctgcgacctcctt 12320
Query: 325 cgataaagagacggacgcagggcgtatttcaccgagggaaatgctggcaaaatgtttcat 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12319 cgataaagagacggacgcagggcgtatttcaccgagggaaatgctggcaaaatgtttcat 12260
Query: 385 cttgctgtgaagatcggtaaactcggtgtcatgcttgctgacattcggtagaacgaattt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12259 cttgctgtgaagatcggtaaactcggtgtcatgcttgctgacattcggtagaacgaattt 12200
Query: 445 ggcctcttgttcatcgtcattcaatctcaagcttgccaacgaaagacgtgacgctggttg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12199 ggcctcttgttcatcgtcattcaatctcaagcttgccaacgaaagacgtgacgctggttg 12140
Query: 505 aggtaatgcagcagactcgtccactaccagtgccggaaaatctagaaagtccattacaga 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12139 aggtaatgcagcagactcgtccactaccagtgccggaaaatctagaaagtccattacaga 12080
Query: 565 tatgagatctgctatttataattgagtgcaatgattagttagtatgtcagaatcctgatt 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12079 tatgagatctgctatttataattgagtgcaatgattagttagtatgtcagaatcctgatt 12020
Query: 625 tcgcgagtagtttaatgtctctttaatacaatttgtatgactttctatttcgaaaaatga 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12019 tcgcgagtagtttaatgtctctttaatacaatttgtatgactttctatttcgaaaaatga 11960
Query: 685 aagatttaggtttttcgtatttattgaatcggtttatatatggtatgtgtgtaattgagt 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11959 aagatttaggtttttcgtatttattgaatcggtttatatatggtatgtgtgtaattgagt 11900
Query: 745 attgtacaattcanaacataaacaaagtaaagattattattgtttgaatctaccaccagt 804
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11899 attgtacaattcaaaacataaacaaagtaaagattattattgtttgaatctaccaccagt 11840
Query: 805 ggagactacgtacctaattaaaataagggacaataagcatctatagtatgaaatgaaaaa 864
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 11839 ggagactacgtacctaattaaaataagggacaataagcatctatagtatgaatgaaaaaa 11780
Query: 865 agtgaggtattctttcatatcagaacctgg 894
|||||||||||||| ||||||||||||||
Sbjct: 11779 agtgaggtattcttcaatatcagaacctgg 11750
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6652
Number of Sequences: 1807
Number of extensions: 6652
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)