BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC7ZH05RM1.SCF screened BAC_end
         (915 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1394                                                        1596   0.0  

>3x_Contig1394 
          Length = 5721

 Score = 1596 bits (805), Expect = 0.0
 Identities = 842/853 (98%), Gaps = 1/853 (0%)
 Strand = Plus / Minus

                                                                       
Query: 48  taccgttcca-cactgacgaaaagtacttgtgtacttggggtattgacagtgcctacgtc 106
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 taccgttccaacactgacgaaaagtacttgtgtacttggggtattgacagtgcctacgtc 797

                                                                       
Query: 107 gttaacgaattgtctgacgtcgtctccatctgtagaaccgattacccaggtactgaaaac 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 gttaacgaattgtctgacgtcgtctccatctgtagaaccgattacccaggtactgaaaac 737

                                                                       
Query: 167 atggttatcccaactattgtcaacggtggtagcaagttaccattgaccgttgtcgaccag 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 atggttatcccaactattgtcaacggtggtagcaagttaccattgaccgttgtcgaccag 677

                                                                       
Query: 227 gatacatactacacatggcaaggaatgaagacatcggctcaatactacgttaacaatgct 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gatacatactacacatggcaaggaatgaagacatcggctcaatactacgttaacaatgct 617

                                                                       
Query: 287 ggtgtttctaaggaggatggttgtgtctggggtacttctgggtctggtattggtaactgg 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ggtgtttctaaggaggatggttgtgtctggggtacttctgggtctggtattggtaactgg 557

                                                                       
Query: 347 gctccattgaacttcggtgctggtgccactggcggtatctcttatctgtctttgattcca 406
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gctccattgaacttcggtgctggtgccactggcggtatctcttatctgtctttgattcca 497

                                                                       
Query: 407 aacccaaacaaccgtgaagcagccaacttcaacgtcaagattgttgcagctgacggtggt 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aacccaaacaaccgtgaagcagccaacttcaacgtcaagattgttgcagctgacggtggt 437

                                                                       
Query: 467 agcgtcatcggagaatgtgtttacgaaaacggttcctacaacggtggtagcgatggttgt 526
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 agcgtcatcggagaatgtgtttacgaaaacggttcctacaacggtggtagcgatggttgt 377

                                                                       
Query: 527 accgtttcagtgacttctggtgctgctaatttcgttttatacgattaatgactcttttca 586
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 accgtttcagtgacttctggtgctgctaatttcgttttatacgattaatgactcttttca 317

                                                                       
Query: 587 gaggcattggcgggatgttatttaccgttgctgtttttcttttcttccctagtctgctat 646
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gaggcattggcgggatgttatttaccgttgctgtttttcttttcttccctagtctgctat 257

                                                                       
Query: 647 ctgaatcctctgtatctgtcaaaaattgaaatggaactaacatcattaatggtgtcatgt 706
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ctgaatcctctgtatctgtcaaaaattgaaatggaactaacatcattaatggtgtcatgt 197

                                                                       
Query: 707 tgtgcgtgtgtgcatatttttgtgagtactatcttcatgaaagcacgaagcattttcaat 766
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 196 tgtgcgtgtgtgcatatttttgtgagtactatctccatgaaagcacgaagcattttcaat 137

                                                                       
Query: 767 cgacctattagaatgtaccctcattgcgtctcgtacgttttggcatggcaccatctttcg 826
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 136 cgacctataagaatgtaccctcattgcgtctcgtacgttttggcatggcaccatcttccg 77

                                                                       
Query: 827 atgtttcattacactcttcatttcattctggattgatataggagaattgaggtgctcaat 886
           ||||||||||||||||| |||||||||||| ||   ||||| ||||||||| ||||||||
Sbjct: 76  atgtttcattacactctccatttcattctgaatgagtatagaagaattgagttgctcaat 17

                        
Query: 887 tccaacccggcga 899
           |||||||||||||
Sbjct: 16  tccaacccggcga 4


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5682
Number of Sequences: 1807
Number of extensions: 5682
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)