BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZH06FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1535 1229 0.0
>3x_Contig1535
Length = 11102
Score = 1229 bits (620), Expect = 0.0
Identities = 669/680 (98%), Gaps = 4/680 (0%)
Strand = Plus / Plus
Query: 251 tggacaggtgtttaaaccatgttatgcggggaacatgcacgattggcttctttttcgact 310
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 19 tggacaggtgtttaaactttgttatgcggggaacatgcacgattggcttctttttcgact 78
Query: 311 tgctctacagaggcttcgtcatcagcaaaaaaatagcatggggactcgtctctgtgaatc 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 tgctctacagaggcttcgtcatcagcaaaaaaatagcatggggactcgtctctgtgaatc 138
Query: 371 ttttctagtgggatgacatgacgagggtagaaaaaatgtttaacggtagacaacaaactc 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 ttttctagtgggatgacatgacgagggtagaaaaaatgtttaacggtagacaacaaactc 198
Query: 431 ttatgtttgtctatggggtttgggaacatcacacctgactcttgttcatgtttttgtagt 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ttatgtttgtctatggggtttgggaacatcacacctgactcttgttcatgtttttgtagt 258
Query: 491 ctatgcagtttcatttctttctcgtacagatcacaggcttgttggatgtattggtcctgc 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ctatgcagtttcatttctttctcgtacagatcacaggcttgttggatgtattggtcctgc 318
Query: 551 tgttcgggagtcaatttatcctggtaatcggcaattgagatccaaagagattttggcgta 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tgttcgggagtcaatttatcctggtaatcggcaattgagatccaaagagattttggcgta 378
Query: 611 ggtggtggtgtatatgggttgnaagaagtagtatattccgaaaatgaaggatacgacagc 670
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ggtggtggtgtatatgggttg-aagaagtagtatattccgaaaatgaaggatacgacagc 437
Query: 671 gattaggacgagagtaacgacaaaacagaggaaaatgaatccgccgacgttttctgggtc 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gattaggacgagagtaacgacaaaacagaggaaaatgaatccgccgacgttttctgggtc 497
Query: 731 atggaaccattttgcaatggcgtgaggctgggtactgtcggggaatcgtaactcgttatc 790
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 498 atggaaccattttgcaatggcgtgaggctgggtactgtcgggaaatcgtaactcgttatc 557
Query: 791 aattgatggcatgttattggtggcagtacttactagtaatacttgagggaagtggtgata 850
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 558 aattgatggcatgttattggtggcagtacttactagtaatacttgaggg-agtggtgata 616
Query: 851 tccc-aaagtatcataccggagacaga-aatgttgttgagggctggatcagcctttattt 908
|||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 617 tcccaaaagtatcatagcggagacagagaatgttgttgagggctggatcagcctttatat 676
Query: 909 aatttccgcaaccgttctgg 928
||||| |||| |||||||||
Sbjct: 677 aattttcgcagccgttctgg 696
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6200
Number of Sequences: 1807
Number of extensions: 6200
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)