BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZH06RM1.SCF screened BAC_end
(978 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1771 1296 0.0
>3x_Contig1771
Length = 25932
Score = 1296 bits (654), Expect = 0.0
Identities = 755/777 (97%), Gaps = 9/777 (1%)
Strand = Plus / Plus
Query: 47 tgaaagagaaaaaaacgagtttggagcttctccggaagatgaagaataaagttcaagcat 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18231 tgaaagagaaaaaaacgagtttggagcttctccggaagatgaagaataaagttcaagcat 18290
Query: 107 tagtggatgcattctttggttttcggcgtattcagtatctgtgagactaatttcgatagt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18291 tagtggatgcattctttggttttcggcgtattcagtatctgtgagactaatttcgatagt 18350
Query: 167 tatcctagcatttagtatatccaaaggaaggctgtagatataaacaacatgggtggtttc 226
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18351 tatcctagcaattagtatatccaaaggaaggctgtagatataaacaacatgggtggtttc 18410
Query: 227 agatttccaatcaagacaaagcttccttcaacgtatttgaatgctagagttatcagnaga 286
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 18411 agatttccaatcaagacaaagcttccttcaacgtatttgaatgctagagttatcag-aga 18469
Query: 287 caatttcaagagacagcaagttgcagacaatgaagtcactgtaaaggcattgaaattcat 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18470 caatttcaagagacagcaagttgcagacaatgaagtcactgtaaaggcattgaaattcat 18529
Query: 347 tgctagaaatactactctacctccaaggtcgagaatggaagctcagttacaactttctgt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18530 tgctagaaatactactctacctccaaggtcgagaatggaagctcagttacaactttctgt 18589
Query: 407 gatgcctaactatacaagaatgacacaaatcaagaacagatgtattgaaacgggacactc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18590 gatgcctaactatacaagaatgacacaaatcaagaacagatgtattgaaacgggacactc 18649
Query: 467 cagatctgttctgagtgatttcagattgtgtagatcgcaattcagagaacttgccaggat 526
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18650 cagatctgttctgagtgatttcagattgtgtagatcgcaattcagagaacttgccaggaa 18709
Query: 527 aggtgatctacctggtgtgaagaagggtgtatggtagatgcagtttagcatcttttgttc 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18710 aggtgatctacctggtgtgaagaagggtgtatggtagatgcagtttagcatcttttgttc 18769
Query: 587 cctgatactgaagttagtaaaagttggaatcttttctctcccgcatgcatgtaaatattt 646
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 18770 cctgatactgaggttagtaaaagttggaatc-tttctctcccgcatgcatgtaaatattt 18828
Query: 647 ttaattaactcancatatataanagcttgtgtttagacatttaaaaaatacaaaggttaa 706
|||||||||||| ||||||||| ||||||||| |||||| ||||||||||| |||||| |
Sbjct: 18829 ttaattaactcaacatatataa-agcttgtgtatagaca-ttaaaaaatac-aaggttta 18885
Query: 707 atcaatgtaaaagaagcgctttgggttgtggcaaaagcaagtgacatttataagatgagg 766
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 18886 atcaatgtaaaagaagcgc-ttgggttgtggc-aaagcaagtgacatttataagatgaga 18943
Query: 767 aagtgcagtattaggggtgataaatttaaaggttcttaccaaa-aaaagagtgtagg 822
|||||||||| ||| |||||||| || ||| ||||||| ||| |||||||||||||
Sbjct: 18944 aagtgcagta-tagtggtgataatatttaagtttcttacaaaataaaagagtgtagg 18999
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7604
Number of Sequences: 1807
Number of extensions: 7604
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 978
length of database: 10,358,551
effective HSP length: 16
effective length of query: 962
effective length of database: 10,329,639
effective search space: 9937112718
effective search space used: 9937112718
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)