BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZH07FM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig501 1469 0.0
>3x_Contig501
Length = 2416
Score = 1469 bits (741), Expect = 0.0
Identities = 805/822 (97%), Gaps = 4/822 (0%)
Strand = Plus / Minus
Query: 88 attggtcaagagccattgctgcccaacctctgaagacctcaaaggcttatttcatcggtg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947 attggtcaagagccattgctgcccaacctctgaagacctcaaaggcttatttcatcggtg 888
Query: 148 ccgtgtcctggttcgttatcccatggactatgggtctatgtttgggtttagcagccagag 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 ccgtgtcctggttcgttatcccatggactatgggtctatgtttgggtttagcagccagag 828
Query: 208 ccacctcgattttttctggattcccaccattgagtgattctgaaatttcttctggtttat 267
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 ccacctcgattttacctggattcccaccattgagtgattctgaaatttcttctggtttat 768
Query: 268 cagctgtggcaggtgcctctcaccttgtcggccatgcaggtactggtatgattctactca 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 cagctgtggcaggtgcctctcaccttgtcggccatgcaggtactggtatgattctactca 708
Query: 328 tgatctttttgtcagtgacttcctcattctctggtgagttgatcgctacttcaactttgc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 tgatctttttgtcagtgacttcctcattctctggtgagttgatcgctacttcaactttgc 648
Query: 388 tatcttacgatgtttacaagaaatacattaagcaaaacgctactcctcatgaagttttgc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 tatcttacgatgtttacaagaaatacattaagcaaaacgctactcctcatgaagttttgc 588
Query: 448 tagtctctaagatcggtgtctttttctgggccatctttgctggtagtattgccagtatct 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 tagtctctaagatcggtgtctttttctgggccatctttgctggtagtattgccagtatct 528
Query: 508 tccacagaatcggtatttctatgggttggttgtttaacttcttgggttgtgcaactgcaa 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tccacagaatcggtatttctatgggttggttgtttaacttcttgggttgtgcaactgcaa 468
Query: 568 gtggtgttttcccagtggctttgaccttcacatggaacaggttgaacagatggggtgctg 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gtggtgttttcccagtggctttgaccttcacatggaacaggttgaacagatggggtgctg 408
Query: 628 tgagtggctccattggaggtatgatcttggccatcattgtgtggttagtcacttgcaaat 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tgagtggctccattggaggtatgatcttggccatcattgtgtggttagtcacttgcaaat 348
Query: 688 gttacttgggcgaaatcaacgtcgataacttggccaacanatgggtttcatttcgccg-t 746
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
Sbjct: 347 gttacttgggcgaaatcaacgtcgataacttggccaacagatgggtttcatt-cgccggt 289
Query: 747 aacgctaccgcattgttcatgggtggcatcctatncattggtctttttttgatctgccca 806
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||
Sbjct: 288 aacgctaccgcattgttcatgggtggcatcctatccattggtctttctttgatctggcca 229
Query: 807 gatgatttcga-tggaatagcattagaaacaaaactat-ttaactgaacatctaaaagng 864
||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 228 gatgatttcgattggaatagcattagaaacaaaactatcttaactgaacatctagacagt 169
Query: 865 gattcattatcttcaggcgctccatcaattgtacaagaggag 906
||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 168 gattcatcatcttcagccgctccatcaattgtacaagaggag 127
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5241
Number of Sequences: 1807
Number of extensions: 5241
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)