BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZH07RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1484 1152 0.0
>3x_Contig1484
Length = 9345
Score = 1152 bits (581), Expect = 0.0
Identities = 606/613 (98%), Gaps = 1/613 (0%)
Strand = Plus / Plus
Query: 48 gaatcgagatttgcagtcaaatttattatcacgtgtaaatcaggaacctgtaaagatgcc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057 gaatcgagatttgcagtcaaatttattatcacgtgtaaatcaggaacctgtaaagatgcc 1116
Query: 108 aatgtttcatattcttgtaattgttcgttaatcatagagataatctgtgtatatggggaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1117 aatgtttcatattcttgtaattgttcgttaatcatagagataatctgtgtatatggggaa 1176
Query: 168 ttatttgggttggaaagcactgggaaatcaagatcctggcacaagatcgtagcaaactgt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1177 ttatttgggttggaaagcactgggaaatcaagatcctggcacaagatcgtagcaaactgt 1236
Query: 228 tctggagtcatcgaatggtcgttcaaattccacatgaaaaaatctgctaacttgtgtcca 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1237 tctggagtcatcgaatggtcgttcaaattccacatgaaaaaatctgctaacttgtgtcca 1296
Query: 288 ctgaattcaacgtttaaccgtattggaaccattatcgggctttctatatccacttgctgc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1297 ctgaattcaacgtttaaccgtattggaaccattatcgggctttctatatccacttgctgc 1356
Query: 348 ggatcctggatagaatctccaagaaggtctttataactgatagcgatcctactttgcacg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1357 ggatcctggatagaatctccaagaaggtctttataactgatagcgatcctactttgcacg 1416
Query: 408 aaagtttccctaatcctaggatatttcaacaaagctagcggagtggcagaatcatcctga 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1417 aaagtttccctaatcctaggatatttcaacaaagctagcggagtggcagaatcatcctga 1476
Query: 468 ctttcaaggtcgggcaagtcgtttagtttgatgcgatccaattctgagctaggatttgac 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1477 ctttcaaggtcgggcaagtcgtttagtttgatgcgatccaattctgagctaggatttgac 1536
Query: 528 gttcctgcagtaccatcgtttgtaccgtctggcccagtatctgcagccggcgttccgcca 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1537 gttcctgcagtaccatcgtttgtaccgtctggcccagtatctgcagccggcgttccgcca 1596
Query: 588 gtgacagcacccgggtcaccagacccgggcgtgcccctaccaatggcaccattcttcacc 647
||||||||||| |||||||||||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 1597 gtgacagcaccggggtcaccagacccgggcgtgccctcaccaatgccacca-tcttcacc 1655
Query: 648 gagttcccccgct 660
|||| || |||||
Sbjct: 1656 gagtcccgccgct 1668
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6227
Number of Sequences: 1807
Number of extensions: 6227
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)