BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZH09FM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1103 1483 0.0
>3x_Contig1103
Length = 3850
Score = 1483 bits (748), Expect = 0.0
Identities = 764/769 (99%), Gaps = 1/769 (0%)
Strand = Plus / Plus
Query: 85 cacagtttaatccacgatgcaccaagtgactcaggagagtacattactataattgattca 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 cacagtttaatccacgatgcaccaagtgactcaggagagtacattactataattgattca 293
Query: 145 cttaatgacctaatcaaagaaaccacaatagaagatagaagaaatgaaatcgccagctcg 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 cttaatgacctaatcaaagaaaccacaatagaagatagaagaaatgaaatcgccagctcg 353
Query: 205 aaagatatcttctttcaacttcgagaatcagctatacttggaaaatctgttgatttgaaa 264
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 aaagatatcttcttccaacttcgagaatcagctatacttggaaaatctgttgatttgaaa 413
Query: 265 caagcttgcagtagccagtatatgagaattgttaaaggaattgtaataatagcgaggaat 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 caagcttgcagtagccagtatatgagaattgttaaaggaattgtaataatagcgaggaat 473
Query: 325 ctttcagttgcaaatcaggttatacctcaaaatattctactacctaacacattcctggca 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ctttcagttgcaaatcaggttatacctcaaaatattctactacctaacacattcctggca 533
Query: 385 tggtatttatccatttccagacaaactgtgtgtacgcctggtgatttgaagcaattatat 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tggtatttatccatttccagacaaactgtgtgtacgcctggtgatttgaagcaattatat 593
Query: 445 ggtctagtatgtcaattttacttcaattgcacccgaactaatgttgtctttgatgagagc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ggtctagtatgtcaattttacttcaattgcacccgaactaatgttgtctttgatgagagc 653
Query: 505 tgttttgatgatcatatgaatttcatggtagaaatgctgcggtttattgatgatgatggc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tgttttgatgatcatatgaatttcatggtagaaatgctgcggtttattgatgatgatggc 713
Query: 565 attgttaatgcgtactctctgtggctctcaaatataangaaaagtgatgcattcatctca 624
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 714 attgttaatgcgtactctctgtggctctcaaatataatgaaaagtgatgcattcatctca 773
Query: 625 tctttactcaatgatattagatctttggaagttatcgacaaactactactgcggggaata 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 tctttactcaatgatattagatctttggaagttatcgacaaactactactgcggggaata 833
Query: 685 attgcacagaaaactgagattgacttgctcgttgaagaggaagatgaggataaaaatctt 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 attgcacagaaaactgagattgacttgctcgttgaagaggaagatgaggataaaaatctt 893
Query: 745 tcttccttagctactattcaactaaaaatattaaaacagttagtaacacatgaatgcttc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 tcttccttagctactattcaactaaaaatattaaaacagttagtaacacatgaatgcttc 953
Query: 805 gggtcttatatgaaaaccttacganaag-atatggttntgcttctttca 852
|||||||||||||||||||||||| ||| |||||||| |||||||||||
Sbjct: 954 gggtcttatatgaaaaccttacgaaaagaatatggttttgcttctttca 1002
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8073
Number of Sequences: 1807
Number of extensions: 8073
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)