BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZH09RM1.SCF screened BAC_end
(966 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1787 1475 0.0
>3x_Contig1787
Length = 34189
Score = 1475 bits (744), Expect = 0.0
Identities = 825/849 (97%), Gaps = 3/849 (0%)
Strand = Plus / Minus
Query: 47 tggattcttccatgcagtcatgacgtatcccgcgttcttgtactcattcctgatgttgtg 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21480 tggattcttccatgcagtcatgacgtatcccgcgttcttgtactcattcctgatgttgtg 21421
Query: 107 acttaacgtattgaaatgtgggaattgccatgcgtataacaacccagcaagacaccatgc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21420 acttaacgtattgaaatgtgggaattgccatgcgtataacaacccagcaagacaccatgc 21361
Query: 167 accaggatgggataatggagaagatgcagcccaccccattagaggaggaattgcaccgac 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21360 accaggatgggataatggagaagatgcagcccaccccattagaggaggaattgcaccgac 21301
Query: 227 aagtgctccaacccatgtgttaattatgtgtttcctttttaatgaagtgtataaccatgc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21300 aagtgctccaacccatgtgttaattatgtgtttcctttttaatgaagtgtataaccatgc 21241
Query: 287 atataaagcgatgttggaaaaaccaaggaaggccaccgttggattaacacctaaccataa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21240 atataaagcgatgttggaaaaaccaaggaaggccaccgttggattaacacctaaccataa 21181
Query: 347 aatagatgtaccgagggtacctgccgcagtagcaaatttgaatgcttgatttggtgatac 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21180 aatagatgtaccgagggtacctgccgcagtagcaaatttgaatgcttgatttggtgatac 21121
Query: 407 tattcctctaacaacaggtctggcctgcgttctaatcatttgacgatcgaaatcaggctc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21120 tattcctctaacaacaggtctggcctgcgttctaatcatttgacgatcgaaatcaggctc 21061
Query: 467 acggcccatatttatggcattggcagatgctgaacacaaggtggtacccacagtcaatga 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21060 acggcccatatttatggcattggcagatgctgaacacaaggtggtacccacagtcaatga 21001
Query: 527 taatagttgcaagactgtagctggatatggtgatagtgcgtacgaacatattgcgctcaa 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21000 taatagttgcaagactgtagctggatatggtgatagtgcgtacgaacatattgcgctcaa 20941
Query: 587 catcactaaaactgtaagtctaggtttcgacaactgtagataaagctcgatatatngttt 646
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 20940 catcactaaaactgtaagtctaggtttcgacaactgtagataaggctcgatatatgtttt 20881
Query: 647 cttcaaagagaccctcgagcgaggctctactctggccttggattcctttatctgctttct 706
||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 20880 cttcaaagagacctcggggcgaggctctactctggccttggattcctttatctgcttcct 20821
Query: 707 ttgtcctttatccacgagtttaactttg-acggtaggttcttcatattatgctgcggntc 765
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||
Sbjct: 20820 ttgtcctttatccacgagtttaactttgaacggtaggttctccatattatgctgcggttc 20761
Query: 766 tgaatctgaaggtgtgtcattgcatctaaatgcttttagagcaattcctttgaggccctc 825
||||||||| | ||||||||||||||| ||||||||||||||| ||||||||||||| ||
Sbjct: 20760 tgaatctgaggttgtgtcattgcatctcaatgcttttagagcagttcctttgaggccttc 20701
Query: 826 agttccagcttcantttcctttttacctgcc-aaagatttgcagtaaact-ttttggggg 883
|||| |||||||| |||| |||||||||||| ||||||| |||||||||| | ||||||
Sbjct: 20700 agtttcagcttcagtttcgtttttacctgccaaaagattcgcagtaaactctattggggc 20641
Query: 884 cgtattgat 892
|||||||||
Sbjct: 20640 cgtattgat 20632
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5243
Number of Sequences: 1807
Number of extensions: 5243
Number of successful extensions: 18
Number of sequences better than 1.0e-20: 1
length of query: 966
length of database: 10,358,551
effective HSP length: 16
effective length of query: 950
effective length of database: 10,329,639
effective search space: 9813157050
effective search space used: 9813157050
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)