BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZH10FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1617 1150 0.0
>3x_Contig1617
Length = 15119
Score = 1150 bits (580), Expect = 0.0
Identities = 636/648 (98%), Gaps = 5/648 (0%)
Strand = Plus / Plus
Query: 85 attatacttgtattgattgtaaccagacatttgatgacggtatctcttacaagaaacaca 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3025 attatacttgtattgattgtaaccagacatttgatgacggtatctcttacaagaaacaca 3084
Query: 145 tccagtgcataacagaggatgaaaaatatcagaaaggattatacaagggtaaaaagaacg 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3085 tccagtgcataacagaggatgaaaaatatcagaaaggattatacaagggtaaaaagaacg 3144
Query: 205 gtaatcagaatgtactcaaaatggaaaacaaccgaacgctcaagtgaagaaggaagtcaa 264
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3145 gtaatcagaatg-ac-caaaatggaaaacaaccgaacgctcaagtgaagaaggaagtcaa 3202
Query: 265 ggtcgaaaagaaagaggaaaagcctgtcaagaaggaatctaaaccagagaagaaggataa 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3203 ggtcgaaaagaaagaggaaaagcctgtcaagaaggaatctaaaccagagaagaaggataa 3262
Query: 325 gaaggataagaaagacaagaagtcaagcctaatcaagggtgaatcattgtataaaatctt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3263 gaaggataagaaagacaagaagtcaagcctaatcaagggtgaatcattgtataaaatctt 3322
Query: 385 aaaatctatcaacaataaagacgacaaaaaagaattattgaagaggttgatcgtaacagc 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3323 aaaatctatcaacaataaagacgacaaaaaagaattattgaagaggttgatcgtaacagc 3382
Query: 445 ggaaaacaaaattgagctgcagtaactaaacgaacattcttcgcacattatttgtttaca 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3383 ggaaaacaaaattgagctgcagtaactaaacgaacattcttcgcacattatttgtttaca 3442
Query: 505 ttattttacagatgatttcgtgaagaaatctatactagtcga-tttaaaagtacataatt 563
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 3443 ttattttacagatgatttcgtgaagaaatctatactag-cgattttaaaagtacataatt 3501
Query: 564 cattaaagagcgtgaaactatcataatcatcacacgctcttagacaaacctttatataat 623
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 3502 cattaaagagcgtgaaactatcataatcatcacacgctcttagacaaacctttagataat 3561
Query: 624 ttaatataaaactgattcaacgattttagcggaaaactgaaggtcttgaacatatactcg 683
||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 3562 ttattataaaactgattcaacgattttagcggaaaactgagggtctcgaacatatactcg 3621
Query: 684 gggagctgatcttgtaactgtttcaaattttgtaacggacctttgttt 731
|||||||||||||||||||||||||| | |||| || |||||||||||
Sbjct: 3622 gggagctgatcttgtaactgtttcaattcttgt-actgacctttgttt 3668
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8714
Number of Sequences: 1807
Number of extensions: 8714
Number of successful extensions: 90
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)