BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZH12FM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1604 1253 0.0
>3x_Contig1604
Length = 15703
Score = 1253 bits (632), Expect = 0.0
Identities = 682/696 (97%), Gaps = 4/696 (0%)
Strand = Plus / Plus
Query: 90 gttaaggatgtgaatgaggatgatctatatgatacccactggctgcttggatctgtggaa 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11134 gttaaggatgtgaatgaggatgatctatatgatacccactggctgcttggatctgtggaa 11193
Query: 150 catggagaattgttatcttcatacactccatctattcctaaggaatggagtgacaaaatt 209
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 11194 catggagaattgttatcttcagacactccatctattcctaaggaatggagtgacaaaatt 11253
Query: 210 agtgaatttctgtttacaaaatcctcatcatatcaagatatgtcaaatacctggacactt 269
|||||| | || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11254 agtgaaatcttgcaaacaaaatcctcatcatatcaagatatgtcaaatacctggacactt 11313
Query: 270 gaattaaagtcatgtccacacatacagactttcgacttatcgaacttggagaagcgagaa 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11314 gaattaaagtcatgtccacacatacagactttcgacttatcgaacttggagaagcgagaa 11373
Query: 330 ggtggcatttctcaaagctgtaacgactgtggtcttacttctaacctttggttatgtctc 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11374 ggtggcatttctcaaagctgtaacgactgtggtcttacttctaacctttggttatgtctc 11433
Query: 390 cattgtggaaacgtcgcctgtggaagagagcaggttgggatagaggggtactctcatgct 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11434 cattgtggaaacgtcgcctgtggaagagagcaggttgggatagaggggtactctcatgct 11493
Query: 450 ttgaaacattatgaaagcacagatggccacgctttagcgataaaattgggctctttgaca 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11494 ttgaaacattatgaaagcacagatggccacgctttagcgataaaattgggctctttgaca 11553
Query: 510 gctgatgcagctgatatatactgttattcttgtgatgaagatgtgaaattcacccataat 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11554 gctgatgcagctgatatatactgttattcttgtgatgaagatgtgaaattcacccataat 11613
Query: 570 ctgcagttgcaggatatcttgaagttnngggaagtcgaagtaccagccaagtccaaagaa 629
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 11614 ctgcagttgcaggatatcttgaagttttgggaagtcgaagtaccagccaagtccaaagaa 11673
Query: 630 aagacattggtggaattgcaagtggaacaaagtctgaaatgggattttcaaatggtagat 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11674 aagacattggtggaattgcaagtggaacaaagtctgaaatgggattttcaaatggtagat 11733
Query: 690 tcacaaggtaaaagtttaaaacatctacaaaatggtcctgnaatacggtttgggncttta 749
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 11734 tcacaaggtaaaagtttaaaacatctacaaaatggtcctg-aatacggtttgggc--tta 11790
Query: 750 ttaaatttgggccaattcttgctacctaaattctgt 785
||||||||||| ||||||||||||||||||||||||
Sbjct: 11791 ttaaatttggg-caattcttgctacctaaattctgt 11825
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5506
Number of Sequences: 1807
Number of extensions: 5506
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)