BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZH12RM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1568 1237 0.0
>3x_Contig1568
Length = 12470
Score = 1237 bits (624), Expect = 0.0
Identities = 735/764 (96%), Gaps = 6/764 (0%)
Strand = Plus / Plus
Query: 48 aataagggcgtaaaaaaccttgaaaccagataatcttggttccacgaagttcaccactgc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6223 aataagggcgtaaaaaaccttgaaaccagataatcttggttccacgaagttcaccactgc 6282
Query: 108 ccaagttgcaatgaaaggattggatattataagcaagacaaggttttttatcgacagcct 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6283 ccaagttgcaatgaaaggattggatattataagcaagacaaggttttttatcgacagcct 6342
Query: 168 tagattactctcgataattgtcgtagttcttgtcattgggaatgcaagcaagcccatcac 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6343 tagattactctcgataattgtcgtagttcttgtcattgggaatgcaagcaagcccatcac 6402
Query: 228 aatcgcaagtgagaaattcaatactaatagagaagtcaaaacaatggccatatagatgta 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6403 aatcgcaagtgagaaattcaatactaatagagaagtcaaaacaatggccatatagatgta 6462
Query: 288 tgcgaaagctttaaatctgtatgagaaaggttcttggattcttagtctagttctcgaaag 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6463 tgcgaaagctttaaatctgtatgagaaaggttcttggattcttagtctagttctcgaaag 6522
Query: 348 cagcggaagcaccgaaaatataccactgagtcccaaaaggactcgaggtagagggaaata 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6523 cagcggaagcaccgaaaatataccactgagtcccaaaaggactcgaggtagagggaaata 6582
Query: 408 aacgaatagttgcgaagtagcaaaggcaaataccaaagaaatgcagaatgttagaattga 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6583 aacgaatagttgcgaagtagcaaaggcaaataccaaagaaatgcagaatgttagaattga 6642
Query: 468 ccaaatgttgtatatagacagcaacggaagttcaccatatttgttattaaaaatttgatt 527
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 6643 ccaaatgttgtatatagacagcaacggaagttcaccatatttgttattcaaaatttgatt 6702
Query: 528 taatgctgcgaatacataggccaccgagacagccaccgcagtcgccaaattagttcccga 587
|||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 6703 taatgctgcgaatacaaaggccaccgagacagccaccgcagtcgccaaataag-tcccga 6761
Query: 588 ttgatataaaattaccgaggtgctagtagaagattaaagatgaatgattgatggaatttt 647
||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||| |||
Sbjct: 6762 ttgatataaaa-taccgaggtgctagtagaagataaaagaagaatgattgatggaa-ttt 6819
Query: 648 tttcagccagttattgacagatctagacattgcctttggcacacgaccaaaatgtgtgat 707
|| ||| ||||||||||||||||||||| ||||| ||||||||||||||| ||||||
Sbjct: 6820 ttcaagcaagttattgacagatctagacaatgcctctggcacacgaccaaatgttgtgat 6879
Query: 708 gtccggtggtccatcattccccttag-cttttaagtcaatgattggattctcc-acccct 765
||| ||||||||||| ||||||||| |||| ||||||||||||||||||||| ||| ||
Sbjct: 6880 gtcgtgtggtccatcaatccccttagcctttaaagtcaatgattggattctccaaccact 6939
Query: 766 taatgcttcattatcctaaca-ttcttgatttccgaaagtactg 808
|||||||||||| | ||||| ||||||||| | ||||||||||
Sbjct: 6940 aaatgcttcattaccgtaacagttcttgattccagaaagtactg 6983
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8220
Number of Sequences: 1807
Number of extensions: 8220
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)