BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZA03FM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1751 1507 0.0
>3x_Contig1751
Length = 24682
Score = 1507 bits (760), Expect = 0.0
Identities = 833/847 (98%), Gaps = 8/847 (0%)
Strand = Plus / Minus
Query: 87 tgttaccatgccctctaaacaatctgtatagtagacaaatggcacctctggataaacctg 146
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2243 tgttaccatgcc-tctaaacaatctgtatagtagacaaatggcacctctggataaacctg 2185
Query: 147 cagtattgttctaagtattcaaatatggatttacatatcaattcctgtgttcaatcaacc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2184 cagtattgttctaagtattcaaatatggatttacatatcaattcctgtgttcaatcaacc 2125
Query: 207 catttgtgtcacctttgcagagttggtaagtgtgcgtgtttctgtcagtcagggtaacac 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2124 catttgtgtcacctttgcagagttggtaagtgtgcgtgtttctgtcagtcagggtaacac 2065
Query: 267 ccacaatcttttatctttgttctacaaaaactgaaatttgaacaataaaatgtggactct 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2064 ccacaatcttttatctttgttctacaaaaactgaaatttgaacaataaaatgtggactct 2005
Query: 327 gttcaagttaagagcttcagtggaagtgatcatttggaaaggtatttctaacctcactgt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2004 gttcaagttaagagcttcagtggaagtgatcatttggaaaggtatttctaacctcactgt 1945
Query: 387 tcctccatcatctaaagttaatttcgctaaactcaatttgctaactatagaatgagcgag 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1944 tcctccatcatctaaagttaatttcgctaaactcaatttgctaactatagaatgagcgag 1885
Query: 447 agcgttgagaagcaggaggcggttttccgctctgcggaaatgtctcttgttgaaatgtat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1884 agcgttgagaagcaggaggcggttttccgctctgcggaaatgtctcttgttgaaatgtat 1825
Query: 507 attcctcaggaaatctcgagagatgctgtatactctttgggccataccggtttggtccag 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1824 attcctcaggaaatctcgagagatgctgtatactctttgggccataccggtttggtccag 1765
Query: 567 tttagggatttgaatcgtaaggttaagagctttcagcgtacctttgtgagcgatatcaga 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1764 tttagggatttgaatcgtaaggttaagagctttcagcgtacctttgtgagcgatatcaga 1705
Query: 627 agattggataatgtggaaagacaataccgttatcttgtttctttattgcaaaaattcgat 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1704 agattggataatgtggaaagacaataccgttatcttgtttctttattgcaaaaattcgat 1645
Query: 687 attcccctatatcaagaacctttgtcggaagaagtttcggcatcgcctgtgccaccaagc 746
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1644 attcccctatatcaagaacctttgtcggaagaggtttcggcatcgcctgtgccaccaagc 1585
Query: 747 acttctgttattgctgatcatgttg-aaatgcgtcaatattggaaaccag-atgcaacag 804
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 1584 acttctgttattgctgatcatgttgaaaatgcgtcaatattggaaaccagaatgcaacag 1525
Query: 805 ttggttgagtccagcgatggtttggaaactaa-aagacagatttagagcaattta-aact 862
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||
Sbjct: 1524 ttggttgagtccagcgatggtttggaaactaagaagacagatttagagcaatttagagct 1465
Query: 863 gctttgctcgcagccgat-agtttttcaccgggaaatcanatttatc-acattaaa-cac 919
|||||||||||||||||| ||||||||||||| | ||| ||||||| |||||||| |||
Sbjct: 1464 gctttgctcgcagccgataagtttttcaccggagagtcagatttatcaacattaaaccac 1405
Query: 920 ccaccca 926
|||||||
Sbjct: 1404 ccaccca 1398
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6272
Number of Sequences: 1807
Number of extensions: 6272
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)