BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC8ZA03RM1.SCF screened BAC_end
         (969 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1527                                                         914   0.0  

>3x_Contig1527 
          Length = 8131

 Score =  914 bits (461), Expect = 0.0
 Identities = 519/537 (96%), Gaps = 1/537 (0%)
 Strand = Plus / Plus

                                                                        
Query: 52   ctttcactctcttgagtcacactttttctactaatatttcttagagttgtttttcttcct 111
            |||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 6266 ctttcact-tcttgagtcacactttaactactaatatttcttagagttgtttttcttcct 6324

                                                                        
Query: 112  gattccttaccctttttcaagggttctagcatcagtgtagatattcagctcatttccttc 171
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6325 gattccttaccctttttcaagggttctagcatcagtgtagatattcagctcatttccttc 6384

                                                                        
Query: 172  actttttttcttttggtgtttaatgtcgctagggtatcttttataaatatgtcccctcgg 231
            ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |  
Sbjct: 6385 actttttctcttttggtgtttaatgtcgctagggtatcttttataaatatgtccccactt 6444

                                                                        
Query: 232  gtacgcacctacgtgtatgtaactaatttttgatatgtttttagattttccggtgtttat 291
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6445 gtacgcacctacgtgtatgtaactaatttttgatatgtttttagattttccggtgtttat 6504

                                                                        
Query: 292  gaaactgaaaaaaccgcttcgagtaagagttaatgttattgttaagacgtgggtcacaac 351
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6505 gaaactgaaaaaaccgcttcgagtaagagttaatgttattgttaagacgtgggtcacaac 6564

                                                                        
Query: 352  ctaaacgtactggcctatcatagacatactataggtacaccgctctattaccatcttcta 411
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6565 ctaaacgtactggcctatcatagacatactataggtacaccgctctattaccatcttcta 6624

                                                                        
Query: 412  acaatcatataccgaagtgtctgtgatgggtacaggtccatatccttctgcagaagagct 471
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6625 acaatcatataccgaagtgtctgtgatgggtacaggtccatatccttctgcagaagagct 6684

                                                                        
Query: 472  gaatgcttcactcatctgtgatgatgaggaaacacaagcctatgaaatgagagatatgtt 531
            ||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 6685 gaatgctccactcatctgtgatgatgaggaagcacaagcttatgaaatgagagatatgtt 6744

                                                                     
Query: 532  accgggcccagattccacccgcaatctcaccgaaactggcgatgaccttcgggaatt 588
            ||||| ||  ||| | ||| |||||||||||||||||||||||||| | ||||||||
Sbjct: 6745 accggcccaggatacgaccagcaatctcaccgaaactggcgatgacatacgggaatt 6801


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7386
Number of Sequences: 1807
Number of extensions: 7386
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 969
length of database: 10,358,551
effective HSP length: 16
effective length of query: 953
effective length of database: 10,329,639
effective search space: 9844145967
effective search space used: 9844145967
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)