BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZA04RM1.SCF screened BAC_end
(965 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1190 952 0.0
>3x_Contig1190
Length = 5329
Score = 952 bits (480), Expect = 0.0
Identities = 528/540 (97%), Gaps = 3/540 (0%)
Strand = Plus / Plus
Query: 49 aagagttcgacactagaatactagataaggttattgaatacatggaatactcgtataagt 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4725 aagagttcgacactagaatactagataaggttattgaatacatggaatactcgtataagt 4784
Query: 109 acaaggatgctgatgacgacgttgaagttcctgagttcaacgtttctcctgatatttcgt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4785 acaaggatgctgatgacgacgttgaagttcctgagttcaacgtttctcctgatatttcgt 4844
Query: 169 tagatttattattagctgctgattatttgggtatatgatgcgatactaaaggctagatag 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4845 tagatttattattagctgctgattatttgggtatatgatgcgatactaaaggctagatag 4904
Query: 229 aacaaaacacagggttgaaatgtgataatagtcatggcaatttcataaagctcactctct 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4905 aacaaaacacagggttgaaatgtgataatagtcatggcaatttcataaagctcactctct 4964
Query: 289 ttgttttcaccttagtcgacatcactggacaataaggacatttgaaattacaagtcccgt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4965 ttgttttcaccttagtcgacatcactggacaataaggacatttgaaattacaagtcccgt 5024
Query: 349 tcttgcttaatttatccagacttttcttggaaagaacgtgatgacagggcaaagaataag 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5025 tcttgcttaatttatccagacttttcttggaaagaacgtgatgacagggcaaagaataag 5084
Query: 409 gtgggttttccttcgtagtctcttctttcaataccggacatatgaatataaggtgatagt 468
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 5085 gtgggttttccttcgtagtctcttctttcaataccggacatatgaatatagggtgatagt 5144
Query: 469 tcgacaagaa-ggtggcagcttgacgtgaaaccggtatttatcaacagtgtaccagttcc 527
|||||||||| ||||||||||||||||||||| | ||| |||| ||||| ||||| |||
Sbjct: 5145 tcgacaagaagggtggcagcttgacgtgaaacggtaattcatcagcagtggaccag-tcc 5203
Query: 528 acatgagatactttcctaatggcttcatatttattggaacacttggaaaccgattacccc 587
||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||
Sbjct: 5204 acatgagatactttcctaatggcttcatatttagt-gaacacttggaaaccgataacccc 5262
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7643
Number of Sequences: 1807
Number of extensions: 7643
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 965
length of database: 10,358,551
effective HSP length: 16
effective length of query: 949
effective length of database: 10,329,639
effective search space: 9802827411
effective search space used: 9802827411
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)