BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZA06FM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1661 1404 0.0
>3x_Contig1661
Length = 14612
Score = 1404 bits (708), Expect = 0.0
Identities = 775/787 (98%), Gaps = 8/787 (1%)
Strand = Plus / Plus
Query: 88 acgttccaaacagaaaaaaaaacatctgatacctaccataaaccttccggttcatggtta 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4894 acgttccaaacagaaaaaaaaacatctgatacctaccataaaccttccggttcatggtta 4953
Query: 148 tatggcagaacgtttccccaggtccgtttgtcttatatatctgattcagaatcatgaata 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4954 tatggcagaacgtttccccaggtccgtttgtcttatatatctgattcagaatcatgaata 5013
Query: 208 ataataataatatttggctataaaaaccctcgagaaatctaattcaagaaactaaggcaa 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5014 ataataataatatttggctataaaaaccctcgagaaatctaattcaagaaactaaggcaa 5073
Query: 268 gaagaaactaccttttaacaagccaagagaataaaccaatgagataaccgagatagctgg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5074 gaagaaactaccttttaacaagccaagagaataaaccaatgagataaccgagatagctgg 5133
Query: 328 gacgtttgaagaatttcccttaattgatggatcccagaaactgacatttgtgacatttcc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5134 gacgtttgaagaatttcccttaattgatggatcccagaaactgacatttgtgacatttcc 5193
Query: 388 acaagtgacgttggacatattattcagtattcggtatgctatagactatataagagggct 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5194 acaagtgacgttggacatattattcagtattcggtatgctatagactatataagagggct 5253
Query: 448 aattaatatgcgttagtagtgtgtaattccagttttgcaattgtccctttcagccggatc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5254 aattaatatgcgttagtagtgtgtaattccagttttgcaattgtccctttcagccggatc 5313
Query: 508 tggggaaaggaagttttggggacaaaaaaagcggttctaggcgcggttttccgtgtagtc 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5314 tggggaaaggaagttttggggacaaaaaaagcggttctaggcgcggttttccgtgtagtc 5373
Query: 568 agcaaaaaaatttgtgcagttatatcggtttatcgtagggagagtaaggacctgaaagga 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5374 agcaaaaaaatttgtgcagttatatcggtttatcgtagggagagtaaggacctgaaagga 5433
Query: 628 tttgtccggatgaaaggctaacggggagaagtcacaagtccgaatggtgtatgggtggcg 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5434 tttgtccggatgaaaggctaacggggagaagtcacaagtccgaatggtgtatgggtggcg 5493
Query: 688 atgtttgcctgcttcttgcaattt-acatgtgacagatatatgagtcagctggacggttg 746
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5494 atgtttgcctgcttcttgcaatttcacatgtgacagatatatgagtcagctggacggttg 5553
Query: 747 ctgacaa-gatgatgactcgacggggggggcgccgggaggggggagattcgctgtagtca 805
||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 5554 ctgacaaggatgatgactcgacggggggggcgcc-ggaagggggagattcgctgtagtca 5612
Query: 806 cgtggtatagggtttaatttttgggttttggtgtttcggntttctcagggaaacccctgg 865
|||||| ||| ||||||||||| ||||||||| |||| | |||||||||| || ||||||
Sbjct: 5613 cgtggt-tagtgtttaattttt-ggttttggt-tttc-gttttctcagggtaa-ccctgg 5667
Query: 866 gtagctt 872
|||||||
Sbjct: 5668 gtagctt 5674
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7013
Number of Sequences: 1807
Number of extensions: 7013
Number of successful extensions: 204
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)