BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZA06RM1.SCF screened BAC_end
(992 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1393 1193 0.0
>3x_Contig1393
Length = 6980
Score = 1193 bits (602), Expect = 0.0
Identities = 713/744 (95%), Gaps = 5/744 (0%)
Strand = Plus / Minus
Query: 40 tcaaccttcgaaaagcaaagaccgatgtccaccaaccttggatttaaaaacttatcgttg 99
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5990 tcaagcttcgaaaagcaaagaccgatgtccaccaaccttggatttaaaaacttatcgttg 5931
Query: 100 agagaggatccgcaactcactgaccagtacgagcagcctcaagccccattccaaccacat 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5930 agagaggatccgcaactcactgaccagtacgagcagcctcaagccccattccaaccacat 5871
Query: 160 ccacaacaaagacaatctagaaactcaacccctgttaaaagtggagtaacgtacaatggt 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5870 ccacaacaaagacaatctagaaactcaacccctgttaaaagtggagtaacgtacaatggt 5811
Query: 220 gtacagtatgtctccggatcagtaccactgcctgcttccaataccaacaataacaaacca 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5810 gtacagtatgtctccggatcagtaccactgcctgcttccaataccaacaataacaaacca 5751
Query: 280 aaagcgtcgtcaattgctcatggattcaaatcaagatttgccgactctgattcggacgaa 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5750 aaagcgtcgtcaattgctcatggattcaaatcaagatttgccgactctgattcggacgaa 5691
Query: 340 gaatccgcaaacctacagttcagcaaccaagggagtcgatctactcaagtttcaagcgaa 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5690 gaatccgcaaacctacagttcagcaaccaagggagtcgatctactcaagtttcaagcgaa 5631
Query: 400 tatgaaccggcacctcctccacccgcgccatacaatcctcatgctactttgagacctcag 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5630 tatgaaccggcacctcctccacccgcgccatacaatcctcatgctactttgagacctcag 5571
Query: 460 ccagagcctcaaataaacgcaactcacactactgagaagaaaaagaagaacaacttcagc 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5570 ccagagcctcaaataaacgcaactcacactactgagaagaaaaagaagaacaacttcagc 5511
Query: 520 agtaaactaaagaagctgtttcggt-acaagaaacactgaaaagtagcgactaatataac 578
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 5510 agtaaactaaagaagct-tttcggtaacaagaaacactgaaaagtagcgactaatataac 5452
Query: 579 acgatacacatgtaatgggcatttataatcccttttgtattctagttacccaaaaattgg 638
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5451 acgaaacacatgtaatgggcatttataatcccttttgtattctagttacccaaaaattgt 5392
Query: 639 gattaaagncacttaaaactacttaatgtacaatttaaaccgaagccttggtgggnttta 698
|||||| |||| ||||||| |||||||||||| ||||||||| ||| || | | |
Sbjct: 5391 gattaagaacactaaaaactatctaatgtacaattcaaaccgaag-ctttgtagtaataa 5333
Query: 699 ataaataaataaattaagggaaatttatttaaagccaattggatgaatttgaaacatctt 758
|||||||||||||| ||| |||| ||| |||||| ||||| ||||| ||||||||||||
Sbjct: 5332 ataaataaataaataaagtgaaa-ttaattaaagtcaatttgatgatattgaaacatctt 5274
Query: 759 ggaggggattattgaaccccttgg 782
|| | |||||||||||| |||||
Sbjct: 5273 -gatgtgattattgaaccacttgg 5251
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7487
Number of Sequences: 1807
Number of extensions: 7487
Number of successful extensions: 91
Number of sequences better than 1.0e-20: 1
length of query: 992
length of database: 10,358,551
effective HSP length: 16
effective length of query: 976
effective length of database: 10,329,639
effective search space: 10081727664
effective search space used: 10081727664
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)