BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZA07FM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1216 1310 0.0
>3x_Contig1216
Length = 5132
Score = 1310 bits (661), Expect = 0.0
Identities = 740/761 (97%), Gaps = 14/761 (1%)
Strand = Plus / Plus
Query: 82 ataactcatccaattctctaaacattcggtgtggaagatgtgtgaacatggtgttatcat 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2132 ataactcatccaattctctaaacattcggtgtggaagatgtgtgaacatggtgttatcat 2191
Query: 142 gtaactctgggcatcaatcttatgcgtttcttcagtctcttctacgtaaacaggaacatc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2192 gtaactctgggcatcaatcttatgcgtttcttcagtctcttctacgtaaacaggaacatc 2251
Query: 202 aaccatacaaattggacacacaaagcaattgttttgtgaaccatattccattaaaataga 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2252 aaccatacaaattggacacacaaagcaattgttttgtgaaccatattccattaaaataga 2311
Query: 262 ttgtggtactggtctgtgataatggtatccatcaggtatcacatgctgtggtaggaacca 321
||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 2312 ttgtggtactggtatgt---------atccatcaggtatcacatgctgtggtaggaacca 2362
Query: 322 tctcgatccaaggagatcttgggaatataggatgagaagttggaaaagcatccaaagtga 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2363 tctcgatccaaggagatcttgggaatataggatgagaagttggaaaagcatccaaagtga 2422
Query: 382 aagtagaacagcaaatcgaacatctatatcatgacggaaaacattggaagggtatgtaaa 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2423 aagtagaacagcaaatcgaacatctatatcatgacggaaaacattggaagggtatgtaaa 2482
Query: 442 cacgtagactattggaataagtctaagtacagatgttccgataatgaaagaccaaagcaa 501
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2483 aacgtagactattggaataagtctaagtacagatgttccgataatgaaagaccaaagcaa 2542
Query: 502 agggatgcaattggtatcaccgttttggagtgattggtatccgttttggcggcggcgacg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2543 agggatgcaattggtatcaccgttttggagtgattggtatccgttttggcggcggcgacg 2602
Query: 562 tggatcgcttcccttaacagcgttcctgcatatttgtggaacccagtaagagttgagtac 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2603 tggatcgcttcccttaacagcgttcctgcatatttgtggaacccagtaagagttgagtac 2662
Query: 622 aacaagtacactatattcaaatatagttcttaattccttgggccatattaatgaggaaag 681
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 2663 aacaagtacactatattcaaatatagttcttatttccttgggccatattaatgaggaaag 2722
Query: 682 tagaataaatatcgagacattcaaagtgaaaaaaaatctaccatattaacgagctgctga 741
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2723 tagaataaatatcgagacaatcaaagtgaaaaaaaatctaccata-taacgagctgctga 2781
Query: 742 tggaatgcttcgtctgggatgacttcggtttacaacggtatttgctttaagaaccccccc 801
||| ||||||||||||| ||||| ||||||||||||||||||||| || |||||||||||
Sbjct: 2782 tgg-atgcttcgtctggtatgac-tcggtttacaacggtatttgc-ttcagaaccccccc 2838
Query: 802 gaagtagcgtaaaaatacccacaccttggttcattgacttg 842
|||||||||| |||||||||||||||| |||||||||||||
Sbjct: 2839 gaagtagcgtcaaaatacccacacctt-gttcattgacttg 2878
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5954
Number of Sequences: 1807
Number of extensions: 5954
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)