BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZA07RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1265 1241 0.0
>3x_Contig1265
Length = 8324
Score = 1241 bits (626), Expect = 0.0
Identities = 703/718 (97%), Gaps = 8/718 (1%)
Strand = Plus / Plus
Query: 48 ccttcaattcatgcaacattggtaggcataaatcaatggattttgtgaagcgc-caattt 106
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 4161 ccttcaattcatgcaacattggtaggcataaatcaatggattttgtgaagcgaacaattt 4220
Query: 107 -acataaagtttccaccagatagttattggttaaagtggaaggcatattaccgtatatac 165
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4221 cacataaagtttccaccagatagttattggttaaagtggaaggcatattaccgtatatac 4280
Query: 166 acgggcaaccaacctcaatgccacgagggaagaatagcgggaataatttgaagaacattt 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4281 acgggcaaccaacctcaatgccacgagggaagaatagcgggaataatttgaagaacattt 4340
Query: 226 catctacagaatccaattgaccagtcatcaaggggttgtaaattctagtctccacaacat 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4341 catctacagaatccaattgaccagtcatcaaggggttgtaaattctagtctccacaacat 4400
Query: 286 tgataacttctccatcatctctattctctaccatacacattatgtctctcattttcccac 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4401 tgataacttctccatcatctctattctctaccatacacattatgtctctcattttcccac 4460
Query: 346 tgatgaaggcttcagcccacgccatatcagtatcttcatctgagtcgaattgtagcttat 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4461 tgatgaaggcttcagcccacgccatatcagtatcttcatctgagtcgaattgtagcttat 4520
Query: 406 tacgatttttgtcaacaaaatctatttcaaaggtacctggcagatacatcttaatagtca 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4521 tacgatttttgtcaacaaaatctatttcaaaggtacctggcagatacatcttaatagtca 4580
Query: 466 tatcacattgtttgaagatattccaagtagtgaacgagatccattcgagagtgaatttaa 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4581 tatcacattgtttgaagatattccaagtagtgaacgagatccattcgagagtgaatttaa 4640
Query: 526 cattcttgccaaaccataactgtggtttttcctgaatgcattccatcaattgtttcaacc 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4641 cattcttgccaaaccataactgtggtttttcctgaatgcattccatcaattgtttcaacc 4700
Query: 586 acactgcaatactagctggatctgaagtgtccagttcagcca-ataaaaaaaggacccga 644
||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||
Sbjct: 4701 acactgcaatactagctggatctgaagtgtccagtccagccacataaaaaaaggagccga 4760
Query: 645 cggtttccttttgagagtcgtgcttcgcaatggggaccaaatcctggggacctaagctta 704
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 4761 cggttttcttttgagagtcgtgcttcgcaatggtgaccaaatcctggggacctaagc-ta 4819
Query: 705 gct-caaactccggaatcaaataattttgcaattacg-cctttgaaagcttgaccggg 760
||| |||||||||| |||| |||||||||||| |||| || |||||||||||||||||
Sbjct: 4820 gctacaaactccgg-atcagataattttgcaa-tacgtccattgaaagcttgaccggg 4875
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8051
Number of Sequences: 1807
Number of extensions: 8051
Number of successful extensions: 90
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)