BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZA10FM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1468 1229 0.0
>3x_Contig1468
Length = 9852
Score = 1229 bits (620), Expect = 0.0
Identities = 725/756 (95%), Gaps = 3/756 (0%)
Strand = Plus / Minus
Query: 87 tgccgtattcctttgacatgcaaaataactttggattatctgtcaactctggatttagat 146
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5098 tgccgtaatcctttgacatgcaaaataactttggattatctgtcaactctggatttagat 5039
Query: 147 aaggttcttctaagcatggacccaaaggtgtctgtgttgtctcattggaatggagagcct 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5038 aaggttcttctaagcatggacccaaaggtgtctgtgttgtctcattggaatggagagcct 4979
Query: 207 ttcaacggatattttgacaagtacacctcgaaatttttaaactcgccagctatcggatct 266
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4978 ttcaacggagattttgacaagtacacctcgaaatttttaaactcgccagctatcggatct 4919
Query: 267 cttctttatttttagaaatatagaagtcttctaatgcaatttctaagtttgagtgtccat 326
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4918 cttctttattttttgaaatatagaagtcttctaatgcaatttctaagtttgagtgtccat 4859
Query: 327 actttctcctatgcggccaataattcaaaatgtgatgacctcatgaaagctcttgtttct 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4858 actttctcctatgcggccaataattcaaaatgtgatgacctcatgaaagctcttgtttct 4799
Query: 387 aacgctatacattcagcgacaatcttttcctttttggatacgttaaacttgaaatctcaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4798 aacgctatacattcagcgacaatcttttcctttttggatacgttaaacttgaaatctcaa 4739
Query: 447 gctccttccactgatccctttaaagacattactattttggaaggcttggatctcagcctg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4738 gctccttccactgatccctttaaagacattactattttggaaggcttggatctcagcctg 4679
Query: 507 gacaaagttgaaaagaattcatcgataaatggatctctttatgatttttcgaacctggat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4678 gacaaagttgaaaagaattcatcgataaatggatctctttatgatttttcgaacctggat 4619
Query: 567 tccctgattgagcttaagaaacggtcagacacttacctctcgattacatcaggtcataca 626
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||
Sbjct: 4618 tccctgattgagcttaagaaacggtctgaaacttacctctcgattacatcaggtcatcca 4559
Query: 627 atagatgcccaacagctggaaatctgttctgagaaagacatcgaaataattaagaaaaca 686
||||||||||||||||||||| || | ||||||||||| |||||||||||||||||||||
Sbjct: 4558 atagatgcccaacagctggaagtcggctctgagaaagagatcgaaataattaagaaaaca 4499
Query: 687 tccaccgcctttcttgcctatcaggaaatagcatcatttcaactttgtggttcttcattc 746
||||||||||| ||||||||||||||| ||||| |||||||||||| ||| |||||||||
Sbjct: 4498 tccaccgccttccttgcctatcaggaattagcaacatttcaactttctgg-tcttcattc 4440
Query: 747 atggtttcaattggggcaaaatattgttgttgacagtaatctttct-caattaaaacat- 804
|||| ||||||||| ||| | ||||||||||||||||| |||||| ||||| ||| ||
Sbjct: 4439 atgggttcaattggtgcagataattgttgttgacagtaaactttctccaattcaaagatc 4380
Query: 805 caattttttttgggaagtttttggattcatttttcc 840
||||||| | | |||||| |||| ||||||| ||||
Sbjct: 4379 caattttatattggaagtatttgaattcattattcc 4344
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7646
Number of Sequences: 1807
Number of extensions: 7646
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)