BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZA10RM1.SCF screened BAC_end
(971 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1582 979 0.0
>3x_Contig1582
Length = 14087
Score = 979 bits (494), Expect = 0.0
Identities = 551/562 (98%), Gaps = 6/562 (1%)
Strand = Plus / Minus
Query: 56 ggatactttgaaaaatttcgaaggtttaaaagatttaataccatgaattacggtgggaaa 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11713 ggatactttgaaaaatttcgaaggtttaaaagatttaataccatgaattacggtgggaaa 11654
Query: 116 ttggtaaaagccagccagtagcaccgttatacaaactgtttaagcagctcgttaggttct 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11653 ttggtaaaagccagccagtagcaccgttatacaaactgtttaagcagctcgttaggttct 11594
Query: 176 gtcatacccgggtcaattgaatatctttgtttcatagagaaatgttctgtgcattcagag 235
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 11593 gtcatacccgggtcaattgaatatctttgtttcatagagaaatgttcggtgcattcagag 11534
Query: 236 ctacacaacctgcattaggtggattattatggaaagtcccatggcgtatgtctggtcctc 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11533 ctacacaacctgcattaggtggattattatggaaagtcccatggcgtatgtctggtcctc 11474
Query: 296 aaaaagcaagacaaagagaccgtttgagaagcgttgatgatgttctttcaactcttaagt 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11473 aaaaagcaagacaaagagaccgtttgagaagcgttgatgatgttctttcaactcttaagt 11414
Query: 356 taggtcttcatcttgaaagaaaccatatggcggtttctgagggatctcagctgaatctac 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11413 taggtcttcatcttgaaagaaaccatatggcggtttctgagggatctcagctgaatctac 11354
Query: 416 gtaagattaaacctcgtgtgaagagcttacgtattttagacaaggctcagtatttcccaa 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11353 gtaagattaaacctcgtgtgaagagcttacgtattttagacaaggctcagtatttcccaa 11294
Query: 476 aggaacccggagatgtctgctactgataagtacagtgtattcaacaggtacttcgaggga 535
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 11293 aggaa-ccggagatgtctgctactgataagtacagtgtattcaacaggtactcgaaggga 11235
Query: 536 tatagaaagggtttacataaaagttcccaaatggacccaagcttttccatcagaagaaaa 595
|||||||||||| ||||| |||||||||||||||| |||||| ||||||||||||| |||
Sbjct: 11234 tatagaaagggtatacat-aaagttcccaaatgga-ccaagc-tttccatcagaag-aaa 11179
Query: 596 cccacgtcattttctgatttgg 617
||||||||| ||||||||||||
Sbjct: 11178 cccacgtca-tttctgatttgg 11158
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8119
Number of Sequences: 1807
Number of extensions: 8119
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 971
length of database: 10,358,551
effective HSP length: 16
effective length of query: 955
effective length of database: 10,329,639
effective search space: 9864805245
effective search space used: 9864805245
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)