BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZA11FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1384 1576 0.0
>3x_Contig1384
Length = 9372
Score = 1576 bits (795), Expect = 0.0
Identities = 830/841 (98%), Gaps = 2/841 (0%)
Strand = Plus / Minus
Query: 89 atggttccagttgaatggttgttcgatattcatttagttgaagcgtaaataccgtcgcct 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8031 atggttccagttgaatggttgttcgatattcatttagttgaagcgtaaataccgtcgcct 7972
Query: 149 tgcgctcatggttccttaaattccgatttaaatagcttcacaacacaagctgcgattaat 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7971 tgcgctcatggttccttaaattccgatttaaatagcttcacaacacaagctgcgattaat 7912
Query: 209 tactttcaattagactacaaaatatgaaaagaatgctagtatgttcgattacatgattgt 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7911 tactttcaattagactacaaaatatgaaaagaatgctagtatgttcgattacatgattgt 7852
Query: 269 tagttcctgaagatgcatagatgatacgtgtctgtttgtgttggtattaaatcatcatga 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7851 tagttcctgaagatgcatagatgatacgtgtctgtttgtgttggtattaaatcatcatga 7792
Query: 329 caagaactagcaccaaaatctgaaaattctataataaagtggtttagatgcaagtttgac 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7791 caagaactagcaccaaaatctgaaaattctataataaagtggtttagatgcaagtttgac 7732
Query: 389 tctttgaatttctaattcatgtttcattatttcaacatcactatgtgacaatcctgtatc 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7731 tctttgaatttctaattcatgtttcattatttcaacatcactatgtgacaatcctgtatc 7672
Query: 449 gaggtcgataccagagagtgggataacaaatgatttccaattccctgtataggacttgtg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7671 gaggtcgataccagagagtgggataacaaatgatttccaattccctgtataggacttgtg 7612
Query: 509 accaatgtaaacggcgatcattatggggattgatagacaatatttgaagaaagcttctgc 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7611 accaatgtaaacggcgatcattatggggattgatagacaatatttgaagaaagcttctgc 7552
Query: 569 actgggtgattcgccgagagggaaaagtgagacgtaaatttcacctacgatcaacagggc 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7551 actgggtgattcgccgagagggaaaagtgagacgtaaatttcacctacgatcaacagggc 7492
Query: 629 actcaaaagtaagcccaaataagccccccaaattccaagcatcgatttgtacgcaatttc 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7491 actcaaaagtaagcccaaataagccccccaaattccaagcatcgatttgtacgcaatttc 7432
Query: 689 gtcggcacttctgttctgtttctttaatgcccatctataacgcaaataagaatagcaaat 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7431 gtcggcacttctgttctgtttctttaatgcccatctataacgcaaataagaatagcaaat 7372
Query: 749 ggagaaccaaatgaacatcgaagaaatagaacataaggcanacaaccaatcaaatacctc 808
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 7371 ggagaaccaaatgaacatcgaagaaatagaacataaggcaaacaaccaatcaaatacctc 7312
Query: 809 gcttactttgttcgaagccacaatgaagggcannaacccgnaaagacccacgacaagaat 868
||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 7311 gctaactttgttcgaagccacaatgaagggcaaaaacccgaaaagacccacgacaagaat 7252
Query: 869 accannacaaggtctacccttacgatcgacatattccacaa-tcgatggtaattgcccag 927
|||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 7251 accaaacaaaggtctacccttacgatcgacatat-ccacaaatcgatggtaattgcccag 7193
Query: 928 a 928
|
Sbjct: 7192 a 7192
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5810
Number of Sequences: 1807
Number of extensions: 5810
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)