BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZA11RM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1272 1348 0.0
>3x_Contig1272
Length = 8315
Score = 1348 bits (680), Expect = 0.0
Identities = 720/728 (98%), Gaps = 4/728 (0%)
Strand = Plus / Plus
Query: 48 taccaaatgtaaatgaaggtttagatgactcagccggtttttcagaggttgttgaggtac 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3487 taccaaatgtaaatgaaggtttagatgactcagccggtttttcagaggttgttgaggtac 3546
Query: 108 cgaatgtgaaagaaggctttttagcttcatcattactgttttccttgcccatagctccaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3547 cgaatgtgaaagaaggctttttagcttcatcattactgttttccttgcccatagctccaa 3606
Query: 168 atgtaaaggaaggctttgatgaatctttgttttcagttgctgtcctttgcactggagcag 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3607 atgtaaaggaaggctttgatgaatctttgttttcagttgctgtcctttgcactggagcag 3666
Query: 228 agaagctaaacgatggtttagagtccgccgatggagcaggggcagagaatgtaccgaagg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3667 agaagctaaacgatggtttagagtccgccgatggagcaggggcagagaatgtaccgaagg 3726
Query: 288 tgctagctggctttgcttcttcctttttattttcactttctttggccaaatctttattgt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3727 tgctagctggctttgcttcttcctttttattttcactttctttggccaaatctttattgt 3786
Query: 348 tgctgaaagaaaatgagaacggagatgatgaattaccattatcagccttatttgacccaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3787 tgctgaaagaaaatgagaacggagatgatgaattaccattatcagccttatttgacccaa 3846
Query: 408 aggcaggaagagctggtttgcttccctcatttttctctatggatggtgcggacgcagaag 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3847 aggcaggaagagctggtttgcttccctcatttttctctatggatggtgcggacgcagaag 3906
Query: 468 gagggaatgttggtttagattgtgaagagttcccaaatatactagctggcttgttatccg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3907 gagggaatgttggtttagattgtgaagagttcccaaatatactagctggcttgttatccg 3966
Query: 528 ttggtttttcagctggttcagattcctctgtccttgaagcatcattctttggtaaagtaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3967 ttggtttttcagctggttcagattcctctgtccttgaagcatcattctttggtaaagtaa 4026
Query: 588 aggcactggacgatacagtcccattaaacgtaaattggggtcccttgatctctatc-tcg 646
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 4027 aggcactggacgatacagtcccattaaacgtaaattggggtcccttgatctctatcgtcg 4086
Query: 647 ctgtcgctatcgctgtcaagttccttacgcttatt-ccaccgaagctgaaaggcggatca 705
||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 4087 ctgtc-ctatcgctgtcaggttccttacgcttattcccaccgaagctgaaaggcggatca 4145
Query: 706 gacgtcgttggtttcttatccaagacatactttgggccttcaacatttaacggctagttt 765
|||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| ||||
Sbjct: 4146 gacgtcgttggtttcttagccaagacaaactttgggccttcaaca-ttaacggctggttt 4204
Query: 766 ttcctctt 773
||||||||
Sbjct: 4205 ttcctctt 4212
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6732
Number of Sequences: 1807
Number of extensions: 6732
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)