BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZA12RM1.SCF screened BAC_end
(1014 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1617 1150 0.0
>3x_Contig1617
Length = 15119
Score = 1150 bits (580), Expect = 0.0
Identities = 719/755 (95%), Gaps = 8/755 (1%)
Strand = Plus / Plus
Query: 94 tgatgacggtactctgttacaagaaacacatatcagatgcataacagaggatgaaaaata 153
||||||||||| ||| ||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 3056 tgatgacggta-tctcttacaagaaacacatc-cag-tgcataacagaggatgaaaaata 3112
Query: 154 tcataaaggattatacaagggtaaaaagaacggtaatcagaatgaccaaaatggaaaaca 213
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3113 tcagaaaggattatacaagggtaaaaagaacggtaatcagaatgaccaaaatggaaaaca 3172
Query: 214 accgaacgctcaagtgaagaaggaagtcaaggtcgaaaagaaagaggaaaagcctgtcaa 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3173 accgaacgctcaagtgaagaaggaagtcaaggtcgaaaagaaagaggaaaagcctgtcaa 3232
Query: 274 gaaggaatctaaaccagagaagaaggataagaaggataagaaagacaagaagtcaagcct 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3233 gaaggaatctaaaccagagaagaaggataagaaggataagaaagacaagaagtcaagcct 3292
Query: 334 aatcaagggtgaatcattgtataaaatcttaaaatctatcaacaataaagacgacaaaaa 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3293 aatcaagggtgaatcattgtataaaatcttaaaatctatcaacaataaagacgacaaaaa 3352
Query: 394 agaattattgaagaggttgatcgtaacagcggaaaacaaaattgagctgcagtaactaaa 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3353 agaattattgaagaggttgatcgtaacagcggaaaacaaaattgagctgcagtaactaaa 3412
Query: 454 cgaacattcttcgcacattatttgtttacattattttacagatgatttcgtgaagaaatc 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3413 cgaacattcttcgcacattatttgtttacattattttacagatgatttcgtgaagaaatc 3472
Query: 514 tatactagcgattttaaaagtacataattcattaaagagcgtgaaactatcataatcatc 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3473 tatactagcgattttaaaagtacataattcattaaagagcgtgaaactatcataatcatc 3532
Query: 574 acacgctcttagacaaacctttagataatttattantaaactgattcaacgattttagcg 633
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 3533 acacgctcttagacaaacctttagataatttattataaaactgattcaacgattttagcg 3592
Query: 634 ggaaactgaaggtctcgaacatatacttggagaagctgatcctgtaactgttt-aattct 692
| ||||||| ||||||||||||||||| || | |||||||| ||||||||||| ||||||
Sbjct: 3593 gaaaactgagggtctcgaacatatactcgg-ggagctgatcttgtaactgtttcaattct 3651
Query: 693 tgtactgacctttggttcaacatcgggaccgtaaacaatcttcgttttatcgtcctttcc 752
|||||||||||||| ||||||| ||| | |||||||||||| ||| | ||||||||| ||
Sbjct: 3652 tgtactgacctttgtttcaacaacggta-cgtaaacaatctccgtctcatcgtccttccc 3710
Query: 753 ctttacgaatccctacttgtaatccataattccattcttgtttcccttgacttgtatcaa 812
||| |||||||| ||||||||||||| || ||||||||| ||||||||||| |||||||
Sbjct: 3711 cttcacgaatcctaacttgtaatccattatcccattcttg-ttcccttgactggtatcaa 3769
Query: 813 accaaagcccctagaacatcccaatatggcttatg 847
|||| || ||||||| ||||| ||||| ||||||
Sbjct: 3770 accacag-ccctagatcatcctcatatgtcttatg 3803
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9144
Number of Sequences: 1807
Number of extensions: 9144
Number of successful extensions: 99
Number of sequences better than 1.0e-20: 1
length of query: 1014
length of database: 10,358,551
effective HSP length: 16
effective length of query: 998
effective length of database: 10,329,639
effective search space: 10308979722
effective search space used: 10308979722
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)