BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZB01FM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig978 1217 0.0
>3x_Contig978
Length = 3477
Score = 1217 bits (614), Expect = 0.0
Identities = 746/781 (95%), Gaps = 7/781 (0%)
Strand = Plus / Minus
Query: 116 attaacaaacaaatcactgggaacaaagatcttgttattggtggtggtgataccggtatt 175
||||| |||||||||| ||||| |||| | ||||||||||||||||||||||||||| |
Sbjct: 2770 attaagaaacaaatcaaggggaagaaagttattgttattggtggtggtgataccggtaat 2711
Query: 176 gattgtttatgtacttcatgtcagacatgg-cgctgcgtcagttttaa-ctaatatttgt 233
||||||||| ||||||| |||||||||||| ||||||||||||| ||| || | ||||
Sbjct: 2710 gattgtttaggtacttc-tgtcagacatgggcgctgcgtcagttctaaactttgagttgt 2652
Query: 234 taccaccaccacctaacgaacgttctaaggacaatccttggcctcaatggccacgtatca 293
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2651 taccacaaccacctaacgaacgttctaaggacaatccttggcctcaatggccacgtatca 2592
Query: 294 tgagaattgattacgggcatgcggaagtgaaagaacattacggaagagatcctcgtgagt 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2591 tgagaattgattacgggcatgcggaagtgaaagaacattacggaagagatcctcgtgagt 2532
Query: 354 actgcatcttatccaaggagtttattggaaatgaaaatggtgaagtgaaagccattaaaa 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2531 actgcatcttatccaaggagtttattggaaatgaaaatggtgaagtgaaagccattaaaa 2472
Query: 414 ccgttcgtgtcgaatggaagaaatctcaatctggtgtttggcaaatggtagatgtaccag 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2471 ccgttcgtgtcgaatggaagaaatctcaatctggtgtttggcaaatggtagatgtaccag 2412
Query: 474 gttctgaacaaatatttgaagctgacatcgttctattatccatgggtttcgtcggccctg 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2411 gttctgaacaaatatttgaagctgacatcgttctattatccatgggtttcgtcggccctg 2352
Query: 534 aagtaatcgaagaccctacctttgtcaaatccaaaagaggtaccatcactacgttgtcag 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2351 aagtaatcgaagaccctacctttgtcaaatccaaaagaggtaccatcactacgttgtcag 2292
Query: 594 attcctcgtactctgttgacggagacaaggtatttgcagcaggtgactgtaggagaggtc 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2291 attcctcgtactctgttgacggagacaaggtatttgcagcaggtgactgtaggagaggtc 2232
Query: 654 aatctctaatcgtgtgggctatccaagagggaagaaagtgtgctacagccattgacacat 713
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2231 aatctctaatcgtgtgggctatccaagagggaagaaagtgtgctacagccattgacaca- 2173
Query: 714 ttcttgatggggtccacaaacttacctggatatggtggtattgtcaaacgtgactacaaa 773
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 2172 ttcttgatggggtccacaaacttacctggaaatggtggtattgtcaaacgtgactacaaa 2113
Query: 774 ctcttgnaagaactagcctccacattttacactattttattattttaaatccaatttgtt 833
|||||| ||||||||||||||||| |||| |||| ||||||||||| ||| | | | |
Sbjct: 2112 ctcttggaagaactagcctccacaatttaaacta-tttattatttttaatacgagtatgt 2054
Query: 834 acgactagttaaaaaacaattatttattaattttcctttatatgaaatgaaatttgattg 893
||||||||| || ||||||||||||||||||||| ||||||||| ||||| |||||||||
Sbjct: 2053 acgactagtaaagaaacaattatttattaatttt-ctttatatg-aatgagatttgattg 1996
Query: 894 a 894
|
Sbjct: 1995 a 1995
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7192
Number of Sequences: 1807
Number of extensions: 7192
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)