BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZB01RM1.SCF screened BAC_end
(1024 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1641 862 0.0
>3x_Contig1641
Length = 13261
Score = 862 bits (435), Expect = 0.0
Identities = 572/602 (95%), Gaps = 13/602 (2%)
Strand = Plus / Plus
Query: 103 gtcccaacccttaaacagtagccacttcccgcgtgcatttagtgtgctaccatcctcatg 162
||||||| ||| |||||||||| ||||||||| |||| || |||| |||||| | |||||
Sbjct: 3860 gtcccaaacctaaaacagtagc-acttcccgc-tgcaatttgtgttctaccagcatcatg 3917
Query: 163 aacaacgtatgagtcaactcctaatgcaatagccttagcgaagagctcatccattgtttc 222
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3918 aacaacgtatgagttaactcctaatgcaatagccttagcgaagagctcatccattgtttc 3977
Query: 223 cttatctggactttttaaagtaatctttgcttgacctcttgccaaccatctgtgagtcat 282
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3978 cttatctggacattttaaagtaatctttgcttgacctcttgccaaccatctgtgagtcat 4037
Query: 283 ctccggattatatgaagttctacttggatcacacgcaataagcctaaaacaggctaatgc 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4038 ctccggattatatgaagttctacttggatcacacgcaataagcctaaaacaggctaatgc 4097
Query: 343 agcatgacaacattgagcagcgattttccctttagtcattcccaaatcttgcctgataac 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4098 agcatgacaacattgagcagcgattttccctttagtcattcccaaatcttgcctgataac 4157
Query: 403 caaggccatccttacttcaccaggaatgtcatttaggcatatggaatctactgcaatgcc 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4158 caaggccatccttacttcaccaggaatgtcatttaggcatatggaatctactgcaatgcc 4217
Query: 463 atcttcatcttcatcttcatcctcagattcgtcttcatcctcgtcctcatcaccatcgtc 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4218 atcttcatcttcatcttcatcctcagattcgtcttcatcctcgtcctcatcaccatcgtc 4277
Query: 523 atgttcactggcatacgcttgctcatttcgctcagccttaatcttcgcttggtttcaaca 582
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 4278 atgttcactggcatacgcttgctcatctcgctcagccttaatcttcgctt-gtttcaaca 4336
Query: 583 attc-tgtatctcattccttccttgatgggtgttatttggtccaagataatattccaatt 641
|||| ||||||||| |||||||||||| |||||||| | |||||||||||||| | | |
Sbjct: 4337 attcttgtatctca-tccttccttgat-ggtgttatct-gtccaagataatat--ccagt 4391
Query: 642 tgtcagaaataattgcttgacagcgtgaaacaccactggttaaattcaacaatgatggtg 701
||||||| |||| ||| |||||||||| |||| |||| | |||||||||| |||||||||
Sbjct: 4392 tgtcagagataa-tgc-tgacagcgtg-aacaacact-gctaaattcaacgatgatggtg 4447
Query: 702 cc 703
||
Sbjct: 4448 cc 4449
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8517
Number of Sequences: 1807
Number of extensions: 8517
Number of successful extensions: 184
Number of sequences better than 1.0e-20: 1
length of query: 1024
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1008
effective length of database: 10,329,639
effective search space: 10412276112
effective search space used: 10412276112
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)