BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZB02FM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1538 1546 0.0
>3x_Contig1538
Length = 9120
Score = 1546 bits (780), Expect = 0.0
Identities = 831/846 (98%), Gaps = 2/846 (0%)
Strand = Plus / Minus
Query: 88 tctgaagatgaggaatcagtggtattgaaattgatggatacgttactcgaatacggggca 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8223 tctgaagatgaggaatcagtggtattgaaattgatggatacgttactcgaatacggggca 8164
Query: 148 ggatggaacttcctagattacgataataagcatattggcgaccttgtcttggagaggaag 207
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 8163 ggatggaacttcctagattacgagaataagcatattggcgaccttgtcttggagaggaag 8104
Query: 208 tatccacaatacctttgtatatatcaacgtatcgtggacgcaggtgtatcggcggaacta 267
||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8103 tatccacaagaccattgcatatatcaacgtatcgtggacgcaggtgtatcggcggaacta 8044
Query: 268 ctactaagaaagatagacggtggtgaaattgaattcattgaagatccagaagatgctgcc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8043 ctactaagaaagatagacggtggtgaaattgaattcattgaagatccagaagatgctgcc 7984
Query: 328 actgaggctgccactgaggctgccactgaggctgaagtcattgaaggagtgacaaagggg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7983 actgaggctgccactgaggctgccactgaggctgaagtcattgaaggagtgacaaagggg 7924
Query: 388 tcggaggaagcaccatttgaggatgcgactgcagcagaccaggctacatatctaaagacc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7923 tcggaggaagcaccatttgaggatgcgactgcagcagaccaggctacatatctaaagacc 7864
Query: 448 gacttggaatacacagacgatgctcttgtcactaaagaaaacagagacggtgtcatgatg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7863 gacttggaatacacagacgatgctcttgtcactaaagaaaacagagacggtgtcatgatg 7804
Query: 508 gattgggagaccgatatcatgtcaatggcagccaaatcactagtatctaccaggtccaca 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7803 gattgggagaccgatatcatgtcaatggcagccaaatcactagtatctaccaggtccaca 7744
Query: 568 gatgaatgtgtcgtactaaatatcggatttggtatggggatcatagacaatttcatccag 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7743 gatgaatgtgtcgtactaaatatcggatttggtatggggatcatagacaatttcatccag 7684
Query: 628 gatgagaaagtgaccaaacactacatctgtgaagcccatccagacgtactggccaaaatg 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7683 gatgagaaagtgaccaaacactacatctgtgaagcccatccagacgtactggccaaaatg 7624
Query: 688 aaggaaactggttggttcgataaagaaaacgttgttatactcgagggtagatggcaatct 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7623 aaggaaactggttggttcgataaagaaaacgttgttatactcgagggtagatggcaatct 7564
Query: 748 cgtctaaacgaacttttggatcaaggagaagtgtttttcgacggcatatattacgatacg 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7563 cgtctaaacgaacttttggatcaaggagaagtgtttttcgacggcatatattacgatacg 7504
Query: 808 ttcagtgaacattacncagatatgctggacttgtacgacgtgattgtcggactactgtaa 867
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 7503 ttcagtgaacattaccaagatatgctggacttgtacgacgtgattgtcggactactgaaa 7444
Query: 868 ccagaaggtacgtttttcgtttctttacgggatggngggctgatagaaccgtttgttacg 927
||||| |||||| |||||| ||||||| |||| | ||||||||||| ||||||||||||
Sbjct: 7443 ccagagggtacg-ttttcg-ttctttaacggattgggggctgatagacccgtttgttacg 7386
Query: 928 acgttt 933
||||||
Sbjct: 7385 acgttt 7380
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5552
Number of Sequences: 1807
Number of extensions: 5552
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)