BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZB02RM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1716 1172 0.0
>3x_Contig1716
Length = 19108
Score = 1172 bits (591), Expect = 0.0
Identities = 646/662 (97%), Gaps = 2/662 (0%)
Strand = Plus / Minus
Query: 53 attaaaaatccttcaaaagtgtatgtatatgattatggtgaggagttcttctctgcaaca 112
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 18308 attaaaaatccttcaaaagtgtatgtagatgattatggtgaggagttcttctctgcaaca 18249
Query: 113 tcgcgtaaggctgagatgtctgggaaagtaaagatggtgtgtttcattttagaagaagta 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18248 tcgcgtaaggctgagatgtctgggaaagtaaagatggtgtgtttcattttagaagaagta 18189
Query: 173 ttaaacgataaggaattcgagtttgttccacatgaagattacgtttacgaattaaaaagg 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18188 ttaaacgataaggaattcgagtttgttccacatgaagattacgtttacgaattaaaaagg 18129
Query: 233 tttttgatgcaatggtcgacgttttctgctgaagcatgttccatgtatgctcttttgaaa 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18128 tttttgatgcaatggtcgacgttttctgctgaagcatgttccatgtatgctcttttgaaa 18069
Query: 293 tcgaaggctttagggaaagttcttgatctatggaccgaggggttagatgatcggccaaat 352
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 18068 tcgaaggctttagggaaagttcttgatctagggaccgaggggttagatgatcggccaaat 18009
Query: 353 actgaccctgatgatcagcttttgccagtagattttgataaattaaaactaagtgacata 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18008 actgaccctgatgatcagcttttgccagtagattttgataaattaaaactaagtgacata 17949
Query: 413 gatgacagatgggatacggagactgatacaagcattgagaatggtgataagacgtccatt 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17948 gatgacagatgggatacggagactgatacaagcattgagaatggtgataagacgtccatt 17889
Query: 473 atgtctgaaaggttctccagaatgctaccagttcaatctcttgatggacaggctgttgac 532
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 17888 atgtctgaaaggttctccagaatgctaccagttcaatctcttgatggacagcctgttgac 17829
Query: 533 aaagttttccgtcaccttcttcagaaatattctttgactgaaagaacttctattcacgga 592
|||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct: 17828 aaagttttccgtcaccttcttcagaaatatcctttgactgaaggaactcctattcacgga 17769
Query: 593 aagattacttttgagtaccacgatcatattctgccactggacatcagaacgcatcaatct 652
| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17768 aggataactttggagtaccacgatcatattctgccactggacatcagaacgcatcaatca 17709
Query: 653 ttgcttagagaatttttgggcgggcttttgatattgattacttagacctattanaagctc 712
|||| |||||||||||| ||||| | ||||||||||||||||||||| ||||| ||||||
Sbjct: 17708 ttgcatagagaattttt-ggcggtc-tttgatattgattacttagacatattagaagctc 17651
Query: 713 gg 714
||
Sbjct: 17650 gg 17649
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7353
Number of Sequences: 1807
Number of extensions: 7353
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)