BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZB03FM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1770 1421 0.0
>3x_Contig1770
Length = 29267
Score = 1421 bits (717), Expect = 0.0
Identities = 833/857 (97%), Gaps = 14/857 (1%)
Strand = Plus / Minus
Query: 92 tgcagaaaacttggagaagctaacaaacacacatacacttccgtctgtattattttctga 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12196 tgcagaaaacttggagaagctaacaaacacacatacacttccgtctgtattattttctga 12137
Query: 152 tccagcaacgtattggtacaacttatttatatgcgcgccaggttcgaagaattccttgtt 211
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 12136 tccagcaacgtattggtacaacttacctatatgcgcgccaggttcgaagaattccttgtt 12077
Query: 212 ttcagcctagaactcngtcgttaatgtcggtttaaacaagaaggagaaggaaagaaaaag 271
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12076 ttcagcctataactctttcgttaatgtcggtttaaacaagaaggagaaggaaagaaaaag 12017
Query: 272 actgcaactatcgaaaaagaaagtagtcatgagtgatttgttaatgagtatcgatgattt 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12016 actgcaactatcgaaaaagaaagtagtcatgagtgatttgttaatgagtatcgatgattt 11957
Query: 332 gatagaaaatgattatccaattcacttggattcaccaggtctaatagaagagttcaagga 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11956 gatagaaaatgattatccaattcacttggattcaccaggtctaatagaagagttcaagga 11897
Query: 392 aacattggaaaaattatactcgtccccttattattcagagtggacggacaccaagactat 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11896 aacattggaaaaattatactcgtccccttattattcagagtggacggacaccaagactat 11837
Query: 452 tgaccgtgatggccctcgaacatttgcaatagattgtgaaatgtgtatgtcagaaaacgg 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11836 tgaccgtgatggccctcgaacatttgcaatagattgtgaaatgtgtatgtcagaaaacgg 11777
Query: 512 acatgttctaacccgatgcagtattgtaaatttcgacggtgatctcatttatgataaatt 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11776 acatgttctaacccgatgcagtattgtaaatttcgacggtgatctcatttatgataaatt 11717
Query: 572 ggtgaagcctgatgttccaattatagattatttgaccaagtacagcggaataaccgaaga 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11716 ggtgaagcctgatgttccaattatagattatttgaccaagtacagcggaataaccgaaga 11657
Query: 632 aaaactacgcgacgttactactacattgaaggatgtacaggaggatcttctcaatatcat 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11656 aaaactacgcgacgttactactacattgaaggatgtacaggaggatcttctcaatatcat 11597
Query: 692 tagctcaaaggatgtattaattggacattcgttgcagtcggaccttaacgttttaaagct 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11596 tagctcaaaggatgtattaattggacattcgttgcagtcggaccttaacgttttaaagct 11537
Query: 752 aagacatcccaatatcgttgacacggcagttatttacgagcacaaagcaggtccttcatt 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 11536 aagacatcccaatatcgttgacacggcagttatttacgagcacaaagcaggtcctccatt 11477
Query: 812 cagaccagcccctaagtattttggccttcggaatattttgaatgtttgatatttcaaaaa 871
|||||||| ||||||| ||||||| |||||||| |||||||| |||||| ||||||||
Sbjct: 11476 cagaccag-ccctaaggtatttggcc-tcggaata-tttgaatg-ttgata-ttcaaaaa 11422
Query: 872 gatacaaggcttggggcccatgattctttatgaagaacgctaaaaacattgcatggnaaa 931
||||| ||||||||| ||||||||| |||||||| ||||| |||||| ||||||| ||
Sbjct: 11421 gatac-aggcttggg--ccatgattc-ttatgaag-acgct-aaaaca-tgcatgg--aa 11371
Query: 932 ctgaccaanctgaagat 948
|||||||| ||||||||
Sbjct: 11370 ctgaccaagctgaagat 11354
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6924
Number of Sequences: 1807
Number of extensions: 6924
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)