BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC8ZB03RM1.SCF screened BAC_end (951 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig220 805 0.0 >3x_Contig220 Length = 1055 Score = 805 bits (406), Expect = 0.0 Identities = 442/450 (98%), Gaps = 3/450 (0%) Strand = Plus / Minus Query: 53 ataataaacatgcagattatcataagagaaggttccttatgaatttggatgaagaagtgg 112 |||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 456 ataataaacagtctgattatcataagagaaggttccttaggaatttggatgaagaagtgg 397 Query: 113 atgaagagcaagtgaaagatgtgaaaagaaggaaaaccgataaggatggtgataaggaag 172 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 396 atgaagagcaagtgaaagatgtgaaaagaaggaaaaccgataaggatggtgataaggaag 337 Query: 173 aggaaagtggcggtggatatacgatgcccaagacttcgcagcatattataactgagctct 232 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 336 aggaaagtggcggtggatatacgatgcccaagacttcgcagcatattataactgagctct 277 Query: 233 cggaagagatggttactgaagttccaggggtacgtaatcttcagttctttaagccttcag 292 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 276 cggaagagatggttactgaagttccaggggtacgtaatcttcagttctttaagccttcag 217 Query: 293 acagacaacatttcgcaattttgtttgatgaaaggtctccagaagatatgactgaagagg 352 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 216 acagacaacatttcgcaattttgtttgatgaaaggtctccagaagatatgactgaagagg 157 Query: 353 aaaggaaacagaaacaggttttaaaattggtacttaaggtgaaaaatgggttaccaagct 412 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 156 aaaggaaacagaaacaggttttaaaattggtacttaaggtgaaaaatgggttaccaagct 97 Query: 413 ctaggaaaatagctctcagagcactcactcaaaaggcacc-ctcttt-cggggcaccatt 470 |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| Sbjct: 96 ctaggaaaatagctctcagagcactcactcaaaaggcacctctctttgcggggcaccatt 37 Query: 471 gtt-atttgattcgatcttgcccattcttc 499 ||| ||||||||| |||||||||||||||| Sbjct: 36 gttgatttgattctatcttgcccattcttc 7 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7264 Number of Sequences: 1807 Number of extensions: 7264 Number of successful extensions: 44 Number of sequences better than 1.0e-20: 1 length of query: 951 length of database: 10,358,551 effective HSP length: 16 effective length of query: 935 effective length of database: 10,329,639 effective search space: 9658212465 effective search space used: 9658212465 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)