BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZB04FM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1041 1415 0.0
>3x_Contig1041
Length = 5356
Score = 1415 bits (714), Expect = 0.0
Identities = 741/749 (98%), Gaps = 1/749 (0%)
Strand = Plus / Minus
Query: 88 agatcagatattgagtcttgcctcttttttttataagtaacgtcttctttagttgttacg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3339 agatcagatattgagtcttgcctcttttttttataagtaacgtcttctttagttgttacg 3280
Query: 148 gtatctacaaggtcaacgttggcaatattagttacagagtctgatgaaactttacgtcca 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3279 gtatctacaaggtcaacgttggcaatattagttacagagtctgatgaaactttacgtcca 3220
Query: 208 gatgaagagttttttaaagtgttcttcaatgtgaggtttttcgttaagtttttcatagca 267
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3219 gatgaagagttggctaaagtgttcttcaatgtgaggtttttcgttaagtttttcatagca 3160
Query: 268 tgcttcgcaagcttgaaaacatagctcttttgccttcgtccctgagatttaatcaagggt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3159 tgcttcgcaagcttgaaaacatagctcttttgccttcgtccctgagatttaatcaagggt 3100
Query: 328 ttcgtgtgttctaatagtccagggaatgcaaagccggtggtaaccattgagcataagatc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3099 ttcgtgtgttctaatagtccagggaatgcaaagccggtggtaaccattgagcataagatc 3040
Query: 388 aaagccggcgctatgttttcattaatcttttcattatcattttttctggttgtattgaac 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3039 aaagccggcgctatgttttcattaatcttttcattatcattttttctggttgtattgaac 2980
Query: 448 aaaataaactgtaagtggttcaatacccttcgtgctacttgaaagctataagatgtagga 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2979 aaaataaactgtaagtggttcaatacccttcgtgctacttgaaagctataagatgtagga 2920
Query: 508 tcatgcgccaaatcccccaataacgcttgcaactgccagaatgtaattagtgcaaagtga 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2919 tcatgcgccaaatcccccaataacgcttgcaactgccagaatgtaattagtgcaaagtga 2860
Query: 568 gggttttcagagctcaaccttaaaagaatttcttccaatgctaatgattccgtttccatt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2859 gggttttcagagctcaaccttaaaagaatttcttccaatgctaatgattccgtttccatt 2800
Query: 628 gtcaaaagaatctgtaccaattgcggaatgtaaaattgaagctccttatgggggaaactt 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2799 gtcaaaagaatctgtaccaattgcggaatgtaaaattgaagctccttatgggggaaactt 2740
Query: 688 aaaagcttctcacaaagatagaaatgaatgccgatgttatcagcgtaccttgtcaagtat 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2739 aaaagcttctcacaaagatagaaatgaatgccgatgttatcagcgtaccttgtcaagtat 2680
Query: 748 tcaatattattgtataatgtaaagttagacgagttgatgtatttcaacagaatattanga 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 2679 tcaatattattgtataatgtaaagttagacgagttgatgtatttcaacagaatatcagga 2620
Query: 808 tttcctgtcggctggcgattccatggttt 836
||||||||| ||| ||||||||||||||
Sbjct: 2619 -ttcctgtcgtctgtcgattccatggttt 2592
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6934
Number of Sequences: 1807
Number of extensions: 6934
Number of successful extensions: 25
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)