BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC8ZB04RM1.SCF screened BAC_end
         (945 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1667                                                         961   0.0  

>3x_Contig1667 
          Length = 12071

 Score =  961 bits (485), Expect = 0.0
 Identities = 578/601 (96%), Gaps = 6/601 (0%)
 Strand = Plus / Minus

                                                                        
Query: 48   ctgctatatgtatccctgccatggcactaggagattcgattagtatatctataccttgac 107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6622 ctgctatatgtatccctgccatggcactaggagattcgattagtatatctataccttgac 6563

                                                                        
Query: 108  atccctcccaagctgtatccaacagagatgagatccaagtagaaaagtttgtagaagcgt 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6562 atccctcccaagctgtatccaacagagatgagatccaagtagaaaagtttgtagaagcgt 6503

                                                                        
Query: 168  ccctcaataaacccatgttcattgatccatgctgtaccatcaaagatattagttctgcag 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6502 ccctcaataaacccatgttcattgatccatgctgtaccatcaaagatattagttctgcag 6443

                                                                        
Query: 228  gattaccagatatttctctaaatcctatattatgagaaactatccaatccttaaattctc 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6442 gattaccagatatttctctaaatcctatattatgagaaactatccaatccttaaattctc 6383

                                                                        
Query: 288  catgagttagtataataacttcatgaccttcggcttgcaaaccctttgccaatgcaatat 347
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 6382 catgagttagtataataacttcatga-cttcggcttgcaaaccctttgccaatgcaatat 6324

                                                                        
Query: 348  atggttgtacatcacctcttgaaccgattgtaagtaatccgaatttgtagcttttactag 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6323 atggttgtacatcacctcttgaaccgattgtaagtaatccgaatttgtagcttttactag 6264

                                                                        
Query: 408  gtttgattacagtggtgaaatacgggtttttttcaacgattaatggaatatcaaagcctt 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6263 gtttgattacagtggtgaaatacgggtttttttcaacgattaatggaatatcaaagcctt 6204

                                                                        
Query: 468  gttcactaattttttcttctaataatttgagactcgcagcttttgagaggcgggggaaca 527
            |||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct: 6203 gttcactaattttttcttctaataatttgagactcgcagcttctgagaggc-ggtgaaca 6145

                                                                        
Query: 528  ac-tcaactgtagactttcgttttaacggtgaccgatgactactttacggattcatgact 586
            || ||| |||||||||||||||||| || ||||||||||||||||   | || |||||||
Sbjct: 6144 acttcagctgtagactttcgttttagcgttgaccgatgactacttacagcatccatgact 6085

                                                                        
Query: 587  ttaat-attac-aactc-ccattattttgaacattcttggtaccaaattctaagaatagt 643
            ||||| || || ||||| | || || | || |||||||| ||||||||||||||||||||
Sbjct: 6084 ttaatcatcacaaactcacaatcatctcgagcattcttgttaccaaattctaagaatagt 6025

             
Query: 644  t 644
            |
Sbjct: 6024 t 6024


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6909
Number of Sequences: 1807
Number of extensions: 6909
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)