BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZB05RM1.SCF screened BAC_end
(845 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1390 775 0.0
>3x_Contig1390
Length = 7609
Score = 775 bits (391), Expect = 0.0
Identities = 428/435 (98%), Gaps = 4/435 (0%)
Strand = Plus / Minus
Query: 146 ggaatttcaccacggttagcaacaagcaacttgttcttttcacccataaggttggaattg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7609 ggaatttcaccacggttagcaacaagcaacttgttcttttcacccataaggttggaattg 7550
Query: 206 tcacgcaatccagctagttgagatgacatggcttgttaagcaaaattatgtgtctgtgtt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7549 tcacgcaatccagctagttgagatgacatggcttgttaagcaaaattatgtgtctgtgtt 7490
Query: 266 ggatgatctatattatattttgagaatagctttattagccgccgtgagttagattctttc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7489 ggatgatctatattatattttgagaatagctttattagccgccgtgagttagattctttc 7430
Query: 326 tttccgcactgctattgcaaagtaatatcctgaaataaaactgtgttaaaatgaacggaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7429 tttccgcactgctattgcaaagtaatatcctgaaataaaactgtgttaaaatgaacggaa 7370
Query: 386 gaatttaaagggtacaatccaaacaaatctgggcgtctattcttggtttctctaacacaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7369 gaatttaaagggtacaatccaaacaaatctgggcgtctattcttggtttctctaacacaa 7310
Query: 446 taacaacaattcaaaaaaaatcacttaagctatattgtcaaaaggatctttcggtcgaag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7309 taacaacaattcaaaaaaaatcacttaagctatattgtcaaaaggatctttcggtcgaag 7250
Query: 506 aaccttacatttggac-aaccacactgagctgaaatc-ttttatattttg-tcactatgt 562
||||||||| |||||| ||||||||||||||||| | |||||||||||| |||||||||
Sbjct: 7249 aaccttacaattggacaaaccacactgagctgaatcctttttatattttgttcactatgt 7190
Query: 563 -atctgaagatgttt 576
||||||||||||||
Sbjct: 7189 aatctgaagatgttt 7175
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6418
Number of Sequences: 1807
Number of extensions: 6418
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 845
length of database: 10,358,551
effective HSP length: 16
effective length of query: 829
effective length of database: 10,329,639
effective search space: 8563270731
effective search space used: 8563270731
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)