BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZB06RM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1641 1281 0.0
>3x_Contig1641
Length = 13261
Score = 1281 bits (646), Expect = 0.0
Identities = 797/836 (95%), Gaps = 9/836 (1%)
Strand = Plus / Minus
Query: 80 tgatgaaggccatgacagcagcggaagatcttgtagaagatccgtttgaagacatcggga 139
|||||||||| |||||| || ||||||||||| ||||||||||||| |||||||| ||||
Sbjct: 12341 tgatgaaggc-atgacaacaacggaagatcttctagaagatccgttagaagacattggga 12283
Query: 140 tgaaatgcctgtcggatgctacgttgaaagaggaacgtctggagcgcgaggagaaagaat 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 12282 tgaaatgcctgtcggatgctacgttgaaagaggaacgtctggagcgcgaggagaaggaat 12223
Query: 200 ttttccttgatttcgtactggccaggtttggcaagttcgattgtggagtgttattcacaa 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12222 ttttccttgatttcgtactggccaggtttggcaagttcgattgtggagtgttattcacaa 12163
Query: 260 cgaccgcggaaccacgtctactcttgatgaagacttttggaataaaaaccaaaattttcc 319
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 12162 cgaccgcggaaccacgtctactcttgatgaagacttttggaataaaa-ccaaaattttcc 12104
Query: 320 tcttgatcattgaaatggggcatatttggtggggcgtcctgtgaatgagaggaagacctg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12103 tcttgatcattgaaatggggcatatttggtggggcgtcctgtgaatgagaggaagacctg 12044
Query: 380 ggctttataaatttcccatgatgagcaggagaagcagtagagaacggagacttggacaac 439
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 12043 ggctttataaatttcccatgaggagcaggagaagcagtagagaacggagacttggacaac 11984
Query: 440 gatccggaatgtgcaagtccgtttaccgataggacactagatccagctgtagcagcagat 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11983 gatccggaatgtgcaagtccgtttaccgataggacactagatccagctgtagcagcagat 11924
Query: 500 gacgaaaaaacacccatgttgctattgttattattagtagcactcccactaccattcaac 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11923 gacgaaaaaacacccatgttgctattgttattattagtagcactcccactaccattcaac 11864
Query: 560 ccatgatgtgacgaaagatcggcactattggtaacttttgaggtcggaattggcatgggc 619
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 11863 ccatgaggtgacgaaagaacggcactattggtaacttttgaggtcggaattggcatgggc 11804
Query: 620 atgggcattcgtccccgtag-actagacttctttgccgtattcttcttcgccgtcgaaga 678
||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 11803 atgggca-tcggtcccgtagaactagacttctttgccgtattcttcttcgccgtcgaaga 11745
Query: 679 tgacccagtgtttaaagatttcgcgctcaacgtaagttctgcagaaacagccattggagc 738
||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||
Sbjct: 11744 ggacccagtgtttaaagattccgcgctcaacgtaggtcctgcagaaacagccattggagc 11685
Query: 739 aagtactggaacagtcacatttaacaactcatcctcctnctcatcctcctcctctggcga 798
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 11684 aagtactggaacagtcacatttaacaactcatcctcctcctcatcctcctcctctggcga 11625
Query: 799 ctttaccgtcttttaactggccgatttttaccttttccaccggaatttggca-gcgttta 857
||| ||||||||| ||||| | |||||| ||||| |||||| ||| |||||| ||| |||
Sbjct: 11624 cttcaccgtctttaaactgccagattttaaccttctccacc-gaaattggcacgcg-tta 11567
Query: 858 ggagttcttattcgaaaaatccggagcattattccttccttcccaatcttttnacc 913
||||||| |||||| ||||| | ||||| || ||||||| ||||| |||||| |||
Sbjct: 11566 ggagttc-tattcgtaaaatactgagcaata-tccttccatcccagtcttttcacc 11513
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5903
Number of Sequences: 1807
Number of extensions: 5903
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)