BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZB07FM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1521 1487 0.0
>3x_Contig1521
Length = 8057
Score = 1487 bits (750), Expect = 0.0
Identities = 796/808 (98%), Gaps = 3/808 (0%)
Strand = Plus / Minus
Query: 90 accataagctatcgcctctccaattttcttagcttcctctagcactctcaagtgattgta 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996 accataagctatcgcctctccaattttcttagcttcctctagcactctcaagtgattgta 937
Query: 150 tgtcgaaatagccctatacaagtgaacctttagggtaattatatccttccatttgtcttc 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 tgtcgaaatagccctatacaagtgaacctttagggtaattatatccttccatttgtcttc 877
Query: 210 tccataaggtttttgtcccaaaagttgctgttgaactatcctcataaaattcttgacatt 269
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 tccataaggcgta-gtcccaaaagttgctgttgaactatcctcataaaattcttgacatt 818
Query: 270 tctcatacaaatttaaggcagtatgtgctagtttgctgatcaaagatgctcttttcgaag 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 tctcatacaaatttaaggcagtatgtgctagtttgctgatcaaagatgctcttttcgaag 758
Query: 330 catctggtccattaatcaacgtcatgagaaacatttcctgagcttcggcgtgcaacaatg 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 catctggtccattaatcaacgtcatgagaaacatttcctgagcttcggcgtgcaacaatg 698
Query: 390 tggagagaaaagatgtattttctgctgcacaatcgatagaaggtgaattcaaaaagttgt 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 tggagagaaaagatgtattttctgctgcacaatcgatagaaggtgaattcaaaaagttgt 638
Query: 450 tcgacatataatcgaagcaagccattgccttgctcaaataaggaatcgcgctcttataat 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tcgacatataatcgaagcaagccattgccttgctcaaataaggaatcgcgctcttataat 578
Query: 510 tatcagacatttttttcttagcgatttgagacaatagaacaccgatgttgtacatgacag 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tatcagacatttttttcttagcgatttgagacaatagaacaccgatgttgtacatgacag 518
Query: 570 atgatttctcaaagactacagnatgttgcttgaattttttttctgacaacctagagtgat 629
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 517 atgatttctcaaagactacagtatgttgcttgaattttttttctgacaacctagagtgat 458
Query: 630 attctgcttcataccacgtgaaatccatctgtaatgaaccgctgtgtgcgcctaacctta 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 attctgcttcataccacgtgaaatccatctgtaatgaaccgctgtgtgcgcctaacctta 398
Query: 690 gatagatttgctccaatatagcggcgtacttatagttctgatctaaataatga-tctggc 748
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 397 gatagatttgctccaatatagcggcgtacttatagttctgatct-aataatgattctggc 339
Query: 749 gcaagatctgaattagcagtggtcctacacgaatcaatctctgccgtcttgtcgccatca 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gcaagatctgaattagcagtggtcctacacgaatcaatctctgccgtcttgtcgccatca 279
Query: 809 taaaacacggaccactggcttgatccgtatgaccttntcaaataagttattaaccctttt 868
|||||||||||||||||||| ||||||||||||||| ||||||| ||||| |||||||||
Sbjct: 278 taaaacacggaccactggctagatccgtatgaccttttcaaataggttataaaccctttt 219
Query: 869 gtccaactaatactctttgtatccttaa 896
|||||||||||||||| |||||||||||
Sbjct: 218 gtccaactaatactctctgtatccttaa 191
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5768
Number of Sequences: 1807
Number of extensions: 5768
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)