BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC8ZB07RM1.SCF screened BAC_end
         (952 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1406                                                        1261   0.0  

>3x_Contig1406 
          Length = 8172

 Score = 1261 bits (636), Expect = 0.0
 Identities = 668/676 (98%), Gaps = 2/676 (0%)
 Strand = Plus / Minus

                                                                        
Query: 49   gcaagatcttctagagtcctgatctctatatgggcattactgttattagcagccgctaga 108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7299 gcaagatcttctagagtcctgatctctatatgggcattactgttattagcagccgctaga 7240

                                                                        
Query: 109  aaacggcgagttacgactcttttcaccaacggtctgaacattattgttctactatctatg 168
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7239 aaacggcgagttacgactcttttcaccaacggtctgaacattattgttctactatctatg 7180

                                                                        
Query: 169  tcaacttcttccaaatagaaaaaacggtacgaatataccaaagtgtgtgtttacaccgtt 228
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7179 tcaacttcttccaaatagaaaaaacggtacgaatataccaaagtgtgtgtttacaccgtt 7120

                                                                        
Query: 229  cactaactgcaatggaaacaaattctgaagctcgcagtatgcctttgtgatccctacgtg 288
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7119 cactaactgcaatggaaacaaattctgaagctcgcagtatgcctttgtgatccctacgtg 7060

                                                                        
Query: 289  tgtactgtaatctccccaggttctttacttcatcagctcctctcgaaaaattgatcatct 348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7059 tgtactgtaatctccccaggttctttacttcatcagctcctctcgaaaaattgatcatct 7000

                                                                        
Query: 349  taaattcctatttacaatattcattttacttaaaaatataccgagaggacagaaatagag 408
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6999 taaattcctatttacaatattcattttacttaaaaatataccgagaggacagaaatagag 6940

                                                                        
Query: 409  tagatacgaaaagattagtaggtaccgctgcctctgacccatgtacaattgctgggtaaa 468
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6939 tagatacgaaaagattagtaggtaccgctgcctctgacccatgtacaattgctgggtaaa 6880

                                                                        
Query: 469  aacgcttaatccttgtacaaaccataagtttgtttagctttccatacttcaaatcttgat 528
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6879 aacgcttaatccttgtacaaaccataagtttgtttagctttccatacttcaaatcttgat 6820

                                                                        
Query: 529  ctctgttgcaattcggccatcttactatggtagaaaccattgttgtgggagttgtcggaa 588
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6819 ctctgttgcaattcggccatcttactatggtagaaaccattgttgtgggagttgtcggaa 6760

                                                                        
Query: 589  gttccatcacttctaatgacagaaccgatactcataaatatgcccaaagtggcagcagga 648
            |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
Sbjct: 6759 gttccatcacttctaatgacagaaccgatactcataaataggccaaaagtggcagcagaa 6700

                                                                        
Query: 649  ccagcgatgtactggcctaaagttctcacaaacccgttttggacctgggcccttgtgtta 708
            |||||||||||||| ||||| ||||||||||||||| |||||||||||| |||||||| |
Sbjct: 6699 ccagcgatgtactgccctaaggttctcacaaacccg-tttggacctggg-ccttgtgtaa 6642

                            
Query: 709  caatggcaacaccacc 724
            ||||||||||||||||
Sbjct: 6641 caatggcaacaccacc 6626


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7176
Number of Sequences: 1807
Number of extensions: 7176
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)