BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZB08FM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1219 1364 0.0
>3x_Contig1219
Length = 5018
Score = 1364 bits (688), Expect = 0.0
Identities = 710/718 (98%)
Strand = Plus / Minus
Query: 81 tatactggtttagaatggctaccaaggagatcgaaatcccacgagacgataaggctcatg 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4825 tatactggtttagaatggctaccaaggagatcgaaatcccacgagacgataaggctcatg 4766
Query: 141 tagaactggaatcagtatcgccacaagcgatggttgagttgggtaagatttacggatttg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4765 tagaactggaatcagtatcgccacaagcgatggttgagttgggtaagatttacggatttg 4706
Query: 201 aagagttagattatttcgttagacaagagcttctgagaaacggaatcactcaagataagg 260
|||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4705 aagagttagacgaatccgttagacaagagcttctgagaaacggaatcactcaagataagg 4646
Query: 261 aaaaatcgatcaaatactattatagatgcgcccatgacttcgattattctcaagcccaat 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4645 aaaaatcgatcaaatactattatagatgcgcccatgacttcgattattctcaagcccaat 4586
Query: 321 acaaattgggtcatttttatgaatttggggagatgggactacctgtaatacccaagaagt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4585 acaaattgggtcatttttatgaatttggggagatgggactacctgtaatacccaagaagt 4526
Query: 381 ccattgcatggtacgcaaagagttccatgaacaagaccaaaccaaacccgttagccatgg 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4525 ccattgcatggtacgcaaagagttccatgaacaagaccaaaccaaacccgttagccatgg 4466
Query: 441 tagcacttagtggctggtaccttaccggtgctgaggggatattgaaaccgaacgacgtag 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4465 tagcacttagtggctggtaccttaccggtgctgaggggatattgaaaccgaacgacgtag 4406
Query: 501 aggccttcaagtgggtgtcacgtgcttcgaaattatctgacgggaaattaccaagagcag 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4405 aggccttcaagtgggtgtcacgtgcttcgaaattatctgacgggaaattaccaagagcag 4346
Query: 561 agtatgcattagcattttacttggagaaaggccttggatgtcagccaaacatacaagagg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4345 agtatgcattagcattttacttggagaaaggccttggatgtcagccaaacatacaagagg 4286
Query: 621 ccaaggtacaccacgaaactgctgctcgtcttggccatccgaaagccatcgaggccttga 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4285 ccaaggtacaccacgaaactgctgctcgtcttggccatccgaaagccatcgaggccttga 4226
Query: 681 ggaaaatgtgaccttgcngttntatttttactgtcctgcgtagctagcttcattgtaatg 740
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 4225 ggaaaatgtgaccttgcggttttatttttactgtcctgcgtagctagcttcattgtaatg 4166
Query: 741 atatgtaataataggaattggttagagtagttagttattggtattctctagaagttaa 798
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 4165 atatgtaataataagatttggttagagtagttagttattggtattctctagaagttaa 4108
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,391
Number of Sequences: 1807
Number of extensions: 16391
Number of successful extensions: 3377
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)