BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZB08RM1.SCF screened BAC_end
(901 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1791 1233 0.0
>3x_Contig1791
Length = 39945
Score = 1233 bits (622), Expect = 0.0
Identities = 812/854 (95%), Gaps = 16/854 (1%)
Strand = Plus / Minus
Query: 48 ttagacaggaacagtagacagatatttgcagtagcattagtgaaacatggatttttttca 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 33471 ttagacaggaacagtagacagatatttgcagtagcattagtgaaacatggattttcttca 33412
Query: 108 atcgaaaccattcaaaccctttttctaaatacggcgccaaaatttagaaagaattatatt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33411 atcgaaaccattcaaaccctttttctaaatacggcgccaaaatttagaaagaattatatt 33352
Query: 168 accttatatttgcctgattacaagacattagcagaagttttaaagatgagcaaacaaata 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33351 accttatatttgcctgattacaagacattagcagaagttttaaagatgagcaaacaaata 33292
Query: 228 ttaacattagacggtcaaattacagaaacggaaaggtgcgttctctcttcattaagattt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33291 ttaacattagacggtcaaattacagaaacggaaaggtgcgttctctcttcattaagattt 33232
Query: 288 cttcttataacaaacttctcaaaagataaaagacgaggcactagatttaagaatatagaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33231 cttcttataacaaacttctcaaaagataaaagacgaggcactagatttaagaatatagaa 33172
Query: 348 gattggaacgaagaaatggaagaacaatttcagcagaaacttgagcaaaatgtgttaggt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33171 gattggaacgaagaaatggaagaacaatttcagcagaaacttgagcaaaatgtgttaggt 33112
Query: 408 atattccaagttttttcgaatgatatgcatgattcggatggtaaaacttcttattatgaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33111 atattccaagttttttcgaatgatatgcatgattcggatggtaaaacttcttattatgaa 33052
Query: 468 aaactacgagtactgaatggtataagttttttgatgaaatatgcttccaagaaatctatt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33051 aaactacgagtactgaatggtataagttttttgatgaaatatgcttccaagaaatctatt 32992
Query: 528 atatctgcacttgctcagctgagtatatgtttac-aacagggtcggagat-ccagaaatt 585
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 32991 atatctgcacttgctcagctgagtatatgtttacaaacagggtcggagataccagaaatc 32932
Query: 586 caacat-atacacctcg-atgctggcatttgctgataaaactttttgatgaggagcaaat 643
|||||| ||||| |||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 32931 caacataataca-ctcgaatgctggcatttgctgataaaacttttgaatgaggagcaaat 32873
Query: 644 aacagccataatcaatgatctgttctgcttgatcttacagaaatggtcaacatttagttt 703
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32872 aacagccataatcaatgatctgttctgcttgatcttacagaaatggtcaacatttagttc 32813
Query: 704 cttttgccagcta-aattgcaagcgatttttgatacg-tgctgaaa-atagacaaaa-tt 759
| |||| ||||| ||| |||||||||||||||||| |||||||| |||||||||| ||
Sbjct: 32812 ttcttgcaagctagaatgccaagcgatttttgatacgttgctgaaagatagacaaaagtt 32753
Query: 760 gg-acttgaaggaagg-cattcatacttttcg-attttt-attaaacaaaaattttagg- 814
|| ||||||||||||| ||||||||||| ||| |||||| | ||| | | ||||| |||
Sbjct: 32752 ggtacttgaaggaaggccattcatacttctcgcatttttaaataacccagaatttcaggt 32693
Query: 815 cctaaaaaaacattccactgttggtcgt-agggtttgaaggtt-ttttaactaccaactg 872
|||| | | |||| ||||||||| |||| ||| |||||||||| ||| ||||||||||||
Sbjct: 32692 cctagagagacatcccactgttgctcgtaaggttttgaaggttatttcaactaccaactg 32633
Query: 873 cctcaggggtttca 886
|||| || |||||
Sbjct: 32632 gctcaaggttttca 32619
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8210
Number of Sequences: 1807
Number of extensions: 8210
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 901
length of database: 10,358,551
effective HSP length: 16
effective length of query: 885
effective length of database: 10,329,639
effective search space: 9141730515
effective search space used: 9141730515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)