BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZB09FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1467 1409 0.0
>3x_Contig1467
Length = 7717
Score = 1409 bits (711), Expect = 0.0
Identities = 766/779 (98%), Gaps = 4/779 (0%)
Strand = Plus / Minus
Query: 137 ttgttgagtactgatgttaactggcttaagtaaaacaacgtcaacctttggatcaaccaa 196
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 5697 ttgttgagtactgatgtttactggcttaggtaaaacaacgtcaacctttggatcaaccaa 5638
Query: 197 aatggtagattcacaagttcctttattttaatttggatgccaaaaagtaccgcaaacttc 256
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 5637 aatggtagattcacaagttcctttacctaaatttggatgccaaaaagtaccgcaaacttc 5578
Query: 257 atcaccgacactccacgtatctgccaaatttgagcctacttctgagatttttccataata 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5577 atcaccgacactccacgtatctgccaaatttgagcctacttctgagatttttccataata 5518
Query: 317 ctctcttccaatgccaacttcatagttcatatgcctagtgtaactattgaatatctttaa 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5517 ctctcttccaatgccaacttcatagttcatatgcctagtgtaactattgaatatctttaa 5458
Query: 377 atcaactgggtttaaaccgacatattccacttgcacggaaatgacatctttagatattgg 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5457 atcaactgggtttaaaccgacatattccacttgcacggaaatgacatctttagatattgg 5398
Query: 437 agtctttatctttgtttcataggagaactgaggaggatgatttttggaatagaatattag 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5397 agtctttatctttgtttcataggagaactgaggaggatgatttttggaatagaatattag 5338
Query: 497 cgatttaaccggcacataatggatatgtcttagcggcctagcgactcttttcatctctaa 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5337 cgatttaaccggcacataatggatatgtcttagcggcctagcgactcttttcatctctaa 5278
Query: 557 aggggaagccaattccctagggtttggtgaatcatgattatatttcaccacatatgccaa 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5277 aggggaagccaattccctagggtttggtgaatcatgattatatttcaccacatatgccaa 5218
Query: 617 cttcggatcgtgtttatttaacaattcttccgccatggtaaaagagttacagcagtatga 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5217 cttcggatcgtgtttatttaacaattcttccgccatggtaaaagagttacagcagtatga 5158
Query: 677 atttatccagaaaggcttgaagtggtaagcatccttgtgttaagggtcatggtagcggaa 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5157 atttatccagaaaggcttgaagtggtaagcatccttgtgttaagggtcatggtagcggaa 5098
Query: 737 gtctgtgtaaactcc-gttctaattcttttaattgacgctttttttaaatgaaatttagt 795
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5097 gtctgtgtaaactccggttctaattcttttaattgacgctttttttaaatgaaatttagt 5038
Query: 796 ttattacgag-aacattagat-atacagaaaatgctt-aaacagagaacatatatacgat 852
||| |||||| |||| ||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 5037 ttaatacgagaaacaatagataatacagaaaatgcttaaaacagagaacatatatacgat 4978
Query: 853 ccggggtatatagtacggacttgtgaacgatatgcatgatgtgggtagaactgaattta 911
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 4977 ccggggtatatagtacggacttgtgaacgatatgcatgatgtggtaagaactgaattta 4919
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6596
Number of Sequences: 1807
Number of extensions: 6596
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)