BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC8ZB09RM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig331 1213 0.0
>3x_Contig331
Length = 1863
Score = 1213 bits (612), Expect = 0.0
Identities = 722/751 (96%), Gaps = 6/751 (0%)
Strand = Plus / Minus
Query: 95 ctgagagacatgtcacaacggggttgcctatcgctgatgtcattatgtaatatcgtaaat 154
|||||||| |||| ||||| || ||| |||||||||||||| |||| |||||||||||||
Sbjct: 756 ctgagagagatgttacaactggattgtctatcgctgatgtc-ttat-taatatcgtaaat 699
Query: 155 cgcaacagacgttgaagtaccacaaattgctacatagtttttgtgattgtaaaagccagc 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 cgcaacagacgttgaagtaccacaaattgctacatagtttttgtgattgtaaaagccagc 639
Query: 215 tttaacatcagatatggttgaaattttttttgttgttctccgtagtgtcgatgaagtgtt 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tttaacatcagatatggttgaaattttttttgttgttctccgtagtgtcgatgaagtgtt 579
Query: 275 cttcgtgatcccagtatttgtcttcgctgtctgtaagaaatcatgtacattagttatcgt 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 cttcgtgatcccagtatttgtcttcgctgtctgtaagaaatcatgtacattagttatcgt 519
Query: 335 cttagaatcttcatcgaaagtgtaaatacctaaatggctttttcctgctattatcaagga 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 cttagaatcttcatcgaaagtgtaaatacctaaatggctttttcctgctattatcaagga 459
Query: 395 tctgctctccggtgaattgattttatctatacttgagacttcctttccgatactcagaga 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tctgctctccggtgaattgattttatctatacttgagacttcctttccgatactcagaga 399
Query: 455 gtatttagcgccgtggaaagttctacgtttgtcaaatgaactttcagaaggtctccatct 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gtatttagcgccgtggaaagttctacgtttgtcaaatgaactttcagaaggtctccatct 339
Query: 515 tgcatttgattcttcttcattaagagagctctctggtccaacatttcccgtaccatcaaa 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tgcatttgattcttcttcattaagagagctctctggtccaacatttcccgtaccatcaaa 279
Query: 575 actgaaaggagtgcggctatctggtttatacttaggtgatatcct-aaaggtgatagtcc 633
|||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 278 actgaagggagtgcggctatctggtttatacttaggtgatatcctaaaaggtgaagttcc 219
Query: 634 caaacctgtgttgtactgtcgatgaaaagagtatcgtgaacttgacgactgatatttcag 693
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 aaaacctgtgttgtactgtcgatgaaaagagtatcgtgaacttgacgactgatatttcag 159
Query: 694 agaggggaggattttctgtttgctgcccttgagaagacgatgtagctctgtttgaaacct 753
||| |||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 158 aga-gggaggattttctggttgctgcccttgagaagacgaagtagctctgtttg-aacct 101
Query: 754 cttttaaacatcgntgagcaacaatactcagtgcttttcatccacggtttattttggcta 813
||||||||||||| ||||||||||||||||||||| | ||| ||||||| |||||||
Sbjct: 100 cttttaaacatcgttgagcaacaatactcagtgctctcgatcaccggttta-tttggctt 42
Query: 814 acaaccaatggctggaatttttgatcatagt 844
||||||||| |||||| |||| ||||||||
Sbjct: 41 acaaccaattgctggatttttgaatcatagt 11
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7477
Number of Sequences: 1807
Number of extensions: 7477
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)